KEGG   PATHWAY: aew00020
Entry
aew00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Actinidia eriantha (wild kiwifruit)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
aew00020  Citrate cycle (TCA cycle)
aew00020

Module
aew_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:aew00020]
aew_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:aew00020]
aew_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:aew00020]
Other DBs
GO: 0006099
Organism
Actinidia eriantha (wild kiwifruit) [GN:aew]
Gene
130774508  citrate synthase, mitochondrial-like isoform X1 [KO:K01647] [EC:2.3.3.1]
130789426  citrate synthase, glyoxysomal [KO:K01647] [EC:2.3.3.1]
130751911  citrate synthase, glyoxysomal-like [KO:K01647] [EC:2.3.3.1]
130781325  citrate synthase, mitochondrial-like isoform X1 [KO:K01647] [EC:2.3.3.1]
130793711  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
130760759  ATP-citrate synthase beta chain protein 2-like [KO:K01648] [EC:2.3.3.8]
130763382  ATP-citrate synthase beta chain protein 2 [KO:K01648] [EC:2.3.3.8]
130790981  ATP-citrate synthase alpha chain protein 1-like [KO:K01648] [EC:2.3.3.8]
130780063  ATP-citrate synthase alpha chain protein 2-like [KO:K01648] [EC:2.3.3.8]
130754345  ATP-citrate synthase alpha chain protein 2 [KO:K01648] [EC:2.3.3.8]
130771294  ATP-citrate synthase alpha chain protein 2 [KO:K01648] [EC:2.3.3.8]
130771403  ATP-citrate synthase alpha chain protein 2-like isoform X1 [KO:K01648] [EC:2.3.3.8]
130763146  putative aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
130789880  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
130791716  aconitate hydratase, cytoplasmic-like [KO:K01681] [EC:4.2.1.3]
130778157  cytosolic isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
130754115  isocitrate dehydrogenase [NADP]-like [KO:K00031] [EC:1.1.1.42]
130784443  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
130759169  cytosolic isocitrate dehydrogenase [NADP]-like [KO:K00031] [EC:1.1.1.42]
130760554  3-isopropylmalate dehydrogenase, chloroplastic-like [KO:K00030] [EC:1.1.1.41]
130763553  3-isopropylmalate dehydrogenase, chloroplastic-like [KO:K00030] [EC:1.1.1.41]
130778106  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
130780401  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial [KO:K00030] [EC:1.1.1.41]
130794822  3-isopropylmalate dehydrogenase, chloroplastic-like [KO:K00030] [EC:1.1.1.41]
130758458  isocitrate dehydrogenase [NAD] regulatory subunit 3, mitochondrial [KO:K00030] [EC:1.1.1.41]
130784539  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
130763493  LOW QUALITY PROTEIN: uncharacterized protein LOC130763493 [KO:K00164] [EC:1.2.4.2]
130793633  uncharacterized protein LOC130793633 [KO:K00164] [EC:1.2.4.2]
130760364  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like isoform X1 [KO:K00658] [EC:2.3.1.61]
130762943  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
130752014  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like isoform X1 [KO:K00658] [EC:2.3.1.61]
130753858  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial-like isoform X1 [KO:K00658] [EC:2.3.1.61]
130772395  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like isoform X1 [KO:K00658] [EC:2.3.1.61]
130786035  dihydrolipoyl dehydrogenase 1, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
130763639  dihydrolipoyl dehydrogenase 2, chloroplastic-like isoform X1 [KO:K00382] [EC:1.8.1.4]
130754324  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
130781547  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
130757768  LOW QUALITY PROTEIN: leghemoglobin reductase-like [KO:K00382] [EC:1.8.1.4]
130771344  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
130791388  succinate--CoA ligase [ADP-forming] subunit alpha-2, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
130772286  succinate--CoA ligase [ADP-forming] subunit alpha-2, mitochondrial-like [KO:K01899] [EC:6.2.1.4 6.2.1.5]
130762773  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
130792141  LOW QUALITY PROTEIN: succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
130783335  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like isoform X1 [KO:K00234] [EC:1.3.5.1]
130785125  succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [KO:K00234] [EC:1.3.5.1]
130777568  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
130768218  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
130768847  LOW QUALITY PROTEIN: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial [KO:K00235] [EC:1.3.5.1]
130751684  fumarate hydratase 1, mitochondrial [KO:K01679] [EC:4.2.1.2]
130760687  LOW QUALITY PROTEIN: malate dehydrogenase-like [KO:K00025] [EC:1.1.1.37]
130773206  malate dehydrogenase-like isoform X1 [KO:K00025] [EC:1.1.1.37]
130774959  malate dehydrogenase-like [KO:K00025] [EC:1.1.1.37]
130764552  malate dehydrogenase-like [KO:K00025] [EC:1.1.1.37]
130777978  malate dehydrogenase-like [KO:K00025] [EC:1.1.1.37]
130761995  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
130762441  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
130762653  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
130777345  malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
130751262  LOW QUALITY PROTEIN: malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
130778859  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
130755154  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
130755856  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
130769333  malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
130796115  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
130776612  phosphoenolpyruvate carboxykinase (ATP) 1-like [KO:K01610] [EC:4.1.1.49]
130777334  phosphoenolpyruvate carboxykinase (ATP) 1 isoform X1 [KO:K01610] [EC:4.1.1.49]
130768122  phosphoenolpyruvate carboxykinase (ATP) 1-like [KO:K01610] [EC:4.1.1.49]
130758398  phosphoenolpyruvate carboxykinase (ATP)-like [KO:K01610] [EC:4.1.1.49]
130752532  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic-like [KO:K00161] [EC:1.2.4.1]
130780032  LOW QUALITY PROTEIN: pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
130780285  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic-like [KO:K00161] [EC:1.2.4.1]
130792297  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
130794072  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic-like [KO:K00161] [EC:1.2.4.1]
130760571  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic-like [KO:K00162] [EC:1.2.4.1]
130750283  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
130753479  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic-like [KO:K00162] [EC:1.2.4.1]
130767855  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial [KO:K00162] [EC:1.2.4.1]
130771595  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
130788694  LOW QUALITY PROTEIN: dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
130776441  dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like [KO:K00627] [EC:2.3.1.12]
130750400  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
130765797  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
130769122  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic-like [KO:K00627] [EC:2.3.1.12]
130758836  dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like [KO:K00627] [EC:2.3.1.12]
130759732  dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
aew00010  Glycolysis / Gluconeogenesis
aew00053  Ascorbate and aldarate metabolism
aew00061  Fatty acid biosynthesis
aew00062  Fatty acid elongation
aew00071  Fatty acid degradation
aew00190  Oxidative phosphorylation
aew00220  Arginine biosynthesis
aew00250  Alanine, aspartate and glutamate metabolism
aew00280  Valine, leucine and isoleucine degradation
aew00350  Tyrosine metabolism
aew00470  D-Amino acid metabolism
aew00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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