KEGG   PATHWAY: afas00020
Entry
afas00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Alicyclobacillus fastidiosus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
afas00020  Citrate cycle (TCA cycle)
afas00020

Module
afas_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:afas00020]
afas_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:afas00020]
afas_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:afas00020]
afas_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:afas00020]
Other DBs
GO: 0006099
Organism
Alicyclobacillus fastidiosus [GN:afas]
Gene
NZD89_07820  citrate synthase [KO:K01647] [EC:2.3.3.1]
NZD89_10530  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
NZD89_21925  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
NZD89_05570  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
NZD89_25580  isocitrate/isopropylmalate family dehydrogenase [KO:K00030] [EC:1.1.1.41]
NZD89_09595  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
NZD89_09600  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
NZD89_24010  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NZD89_25555  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NZD89_17995  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
NZD89_18000  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
NZD89_23335  succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
NZD89_13030  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
NZD89_13035  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
NZD89_13025  succinate dehydrogenase cytochrome b558 subunit [KO:K00241]
NZD89_25045  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
NZD89_12245  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
NZD89_12250  FumA C-terminus/TtdB family hydratase beta subunit [KO:K01678] [EC:4.2.1.2]
NZD89_05575  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
NZD89_10055  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
NZD89_06520  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
NZD89_14905  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
NZD89_25540  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
NZD89_14910  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
NZD89_25545  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
NZD89_05965  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
NZD89_14915  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
NZD89_25550  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
afas00010  Glycolysis / Gluconeogenesis
afas00053  Ascorbate and aldarate metabolism
afas00061  Fatty acid biosynthesis
afas00071  Fatty acid degradation
afas00190  Oxidative phosphorylation
afas00220  Arginine biosynthesis
afas00250  Alanine, aspartate and glutamate metabolism
afas00280  Valine, leucine and isoleucine degradation
afas00350  Tyrosine metabolism
afas00470  D-Amino acid metabolism
afas00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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