KEGG   PATHWAY: afe03430
Entry
afe03430                    Pathway                                
Name
Mismatch repair - Acidithiobacillus ferrooxidans ATCC 53993
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
afe03430  Mismatch repair
afe03430

Other DBs
GO: 0006298
Organism
Acidithiobacillus ferrooxidans ATCC 53993 [GN:afe]
Gene
Lferr_1437  DNA mismatch repair protein MutS [KO:K03555]
Lferr_1972  DNA mismatch repair protein MutS domain protein [KO:K07456]
Lferr_0891  DNA mismatch repair protein MutS domain protein [KO:K07456]
Lferr_1599  DNA mismatch repair protein MutL [KO:K03572]
Lferr_2699  UvrD/REP helicase [KO:K03657] [EC:5.6.2.4]
Lferr_0295  conserved hypothetical protein [KO:K03657] [EC:5.6.2.4]
Lferr_1648  exodeoxyribonuclease VII, large subunit [KO:K03601] [EC:3.1.11.6]
Lferr_1644  exodeoxyribonuclease VII, small subunit [KO:K03602] [EC:3.1.11.6]
Lferr_1442  Exonuclease RNase T and DNA polymerase III [KO:K10857] [EC:3.1.11.-]
Lferr_0636  phosphoesterase RecJ domain protein [KO:K07462] [EC:3.1.-.-]
Lferr_2466  single-strand binding protein [KO:K03111]
Lferr_1280  single-strand binding protein [KO:K03111]
Lferr_0140  single-strand binding protein [KO:K03111]
Lferr_1177  DNA polymerase III, alpha subunit [KO:K02337] [EC:2.7.7.7]
Lferr_0002  DNA polymerase III, beta subunit [KO:K02338] [EC:2.7.7.7]
Lferr_1591  DNA polymerase III, subunits gamma and tau [KO:K02343] [EC:2.7.7.7]
Lferr_0617  DNA polymerase III, delta subunit [KO:K02340] [EC:2.7.7.7]
Lferr_1589  DNA-directed DNA polymerase [KO:K02341] [EC:2.7.7.7]
Lferr_0564  DNA polymerase III, epsilon subunit [KO:K02342] [EC:2.7.7.7]
Lferr_1858  DNA polymerase III chi subunit HolC [KO:K02339] [EC:2.7.7.7]
Lferr_0903  DNA ligase, NAD-dependent [KO:K01972] [EC:6.5.1.2]
Lferr_0139  D12 class N6 adenine-specific DNA methyltransferase [KO:K06223] [EC:2.1.1.72]
Lferr_1279  D12 class N6 adenine-specific DNA methyltransferase [KO:K06223] [EC:2.1.1.72]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
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