KEGG   PATHWAY: afla00020
Entry
afla00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Antarcticibacterium flavum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
afla00020  Citrate cycle (TCA cycle)
afla00020

Module
afla_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:afla00020]
afla_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:afla00020]
afla_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:afla00020]
afla_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:afla00020]
Other DBs
GO: 0006099
Organism
Antarcticibacterium flavum [GN:afla]
Gene
FHG64_06955  citrate synthase [KO:K01647] [EC:2.3.3.1]
FHG64_01290  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
FHG64_14115  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
FHG64_14320  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
FHG64_11105  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
FHG64_11110  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
FHG64_15600  2-oxo acid dehydrogenase subunit E2 [KO:K00658] [EC:2.3.1.61]
FHG64_17250  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FHG64_16785  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FHG64_02205  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FHG64_01780  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
FHG64_04615  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
FHG64_10390  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
FHG64_10395  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
FHG64_10385  succinate dehydrogenase cytochrome b subunit [KO:K00241]
FHG64_01950  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
FHG64_06785  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
FHG64_13950  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
FHG64_18240  accC; acetyl-CoA carboxylase biotin carboxylase subunit [KO:K01959] [EC:6.4.1.1]
FHG64_11235  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
FHG64_07335  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
FHG64_05805  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
FHG64_07330  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
afla00010  Glycolysis / Gluconeogenesis
afla00053  Ascorbate and aldarate metabolism
afla00061  Fatty acid biosynthesis
afla00071  Fatty acid degradation
afla00190  Oxidative phosphorylation
afla00220  Arginine biosynthesis
afla00250  Alanine, aspartate and glutamate metabolism
afla00280  Valine, leucine and isoleucine degradation
afla00350  Tyrosine metabolism
afla00470  D-Amino acid metabolism
afla00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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