KEGG   PATHWAY: agb00020
Entry
agb00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Anoplophora glabripennis (Asian longhorned beetle)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
agb00020  Citrate cycle (TCA cycle)
agb00020

Module
agb_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:agb00020]
agb_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:agb00020]
agb_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:agb00020]
agb_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:agb00020]
agb_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:agb00020]
Other DBs
GO: 0006099
Organism
Anoplophora glabripennis (Asian longhorned beetle) [GN:agb]
Gene
108913803  probable citrate synthase 2, mitochondrial [KO:K01647] [EC:2.3.3.1]
108903861  ATP-citrate synthase isoform X1 [KO:K01648] [EC:2.3.3.8]
108917996  probable aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
108915885  cytoplasmic aconitate hydratase-like isoform X1 [KO:K01681] [EC:4.2.1.3]
108912057  isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
108916727  isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
108917784  probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
108904779  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
108915002  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial [KO:K00030] [EC:1.1.1.41]
108907427  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
108914315  2-oxoglutarate dehydrogenase, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
108909973  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
108908950  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
108904367  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial-like [KO:K01899] [EC:6.2.1.4 6.2.1.5]
108906765  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
108914690  succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
108916077  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
108911027  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
108916345  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
108911244  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
108904979  succinate dehydrogenase [ubiquinone] iron-sulfur subunit-like [KO:K00235] [EC:1.3.5.1]
108904999  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
108909340  succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like [KO:K00236]
108903319  succinate dehydrogenase cytochrome b560 subunit, mitochondrial [KO:K00236]
108912621  succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial [KO:K00237]
108908378  fumarate hydratase, mitochondrial isoform X1 [KO:K01679] [EC:4.2.1.2]
108917464  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
108912380  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
108904227  uncharacterized protein LOC108904227 [KO:K00026] [EC:1.1.1.37]
108914084  uncharacterized protein LOC108914084 [KO:K00026] [EC:1.1.1.37]
108906463  pyruvate carboxylase, mitochondrial [KO:K01958] [EC:6.4.1.1]
108912625  phosphoenolpyruvate carboxykinase [GTP] isoform X1 [KO:K01596] [EC:4.1.1.32]
108915893  pyruvate dehydrogenase E1 component subunit alpha type II, mitochondrial-like isoform X1 [KO:K00161] [EC:1.2.4.1]
108907608  pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
108918024  pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
108908562  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
agb00010  Glycolysis / Gluconeogenesis
agb00053  Ascorbate and aldarate metabolism
agb00061  Fatty acid biosynthesis
agb00062  Fatty acid elongation
agb00071  Fatty acid degradation
agb00190  Oxidative phosphorylation
agb00220  Arginine biosynthesis
agb00250  Alanine, aspartate and glutamate metabolism
agb00280  Valine, leucine and isoleucine degradation
agb00350  Tyrosine metabolism
agb00470  D-Amino acid metabolism
agb00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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