KEGG   PATHWAY: agd00020
Entry
agd00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Anseongella ginsenosidimutans
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
agd00020  Citrate cycle (TCA cycle)
agd00020

Module
agd_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:agd00020]
agd_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:agd00020]
agd_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:agd00020]
agd_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:agd00020]
Other DBs
GO: 0006099
Organism
Anseongella ginsenosidimutans [GN:agd]
Gene
FRZ59_14045  citrate synthase [KO:K01647] [EC:2.3.3.1]
FRZ59_16410  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
FRZ59_09960  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
FRZ59_17415  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
FRZ59_07925  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
FRZ59_15960  2-oxo acid dehydrogenase subunit E2 [KO:K00658] [EC:2.3.1.61]
FRZ59_07930  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
FRZ59_08050  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FRZ59_14380  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FRZ59_17510  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
FRZ59_13300  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
FRZ59_03545  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
FRZ59_03540  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
FRZ59_03550  succinate dehydrogenase cytochrome b subunit [KO:K00241]
FRZ59_05135  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
FRZ59_08380  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
FRZ59_10600  accC; acetyl-CoA carboxylase biotin carboxylase subunit [KO:K01959] [EC:6.4.1.1]
FRZ59_03690  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
FRZ59_06535  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
FRZ59_03685  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
agd00010  Glycolysis / Gluconeogenesis
agd00053  Ascorbate and aldarate metabolism
agd00061  Fatty acid biosynthesis
agd00071  Fatty acid degradation
agd00190  Oxidative phosphorylation
agd00220  Arginine biosynthesis
agd00250  Alanine, aspartate and glutamate metabolism
agd00280  Valine, leucine and isoleucine degradation
agd00350  Tyrosine metabolism
agd00470  D-Amino acid metabolism
agd00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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