KEGG   PATHWAY: agen03008
Entry
agen03008                   Pathway                                
Name
Ribosome biogenesis in eukaryotes - Accipiter gentilis (Northern goshawk)
Description
Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.
Class
Genetic Information Processing; Translation
Pathway map
agen03008  Ribosome biogenesis in eukaryotes
agen03008

Organism
Accipiter gentilis (Northern goshawk) [GN:agen]
Gene
126034877  casein kinase II subunit beta [KO:K03115]
126045864  casein kinase II subunit alpha [KO:K03097] [EC:2.7.11.1]
126040856  casein kinase II subunit alpha' isoform X1 [KO:K03097] [EC:2.7.11.1]
126047088  casein kinase II subunit alpha-like isoform X1 [KO:K03097] [EC:2.7.11.1]
126035918  nucleolar protein 6 [KO:K14544]
126047673  ribosomal RNA-processing protein 7 homolog A [KO:K14545]
126052688  WD repeat-containing protein 43 [KO:K14546]
126041219  U3 small nucleolar RNA-associated protein 4 homolog [KO:K14548]
126036139  U3 small nucleolar RNA-associated protein 15 homolog [KO:K14549]
126051457  HEAT repeat-containing protein 1 isoform X1 [KO:K14550]
126045015  WD repeat-containing protein 75 isoform X1 [KO:K14552]
126043842  U3 small nucleolar RNA-associated protein 18 homolog [KO:K14553]
126036041  WD repeat-containing protein 36 isoform X1 [KO:K14554]
126034095  transducin beta-like protein 3 [KO:K14555]
126048922  WD repeat-containing protein 3 [KO:K14556]
126043410  U3 small nucleolar RNA-associated protein 6 homolog [KO:K14557]
126053202  periodic tryptophan protein 2 homolog [KO:K14558]
126044077  U3 small nucleolar ribonucleoprotein protein MPP10 [KO:K14559]
126046321  U3 small nucleolar ribonucleoprotein protein IMP3 [KO:K14560]
126035189  LOW QUALITY PROTEIN: U3 small nucleolar ribonucleoprotein protein IMP4 [KO:K14561]
126050957  treacle protein isoform X1 [KO:K14562]
126035114  rRNA 2'-O-methyltransferase fibrillarin [KO:K14563] [EC:2.1.1.-]
126051688  nucleolar protein 56 [KO:K14564]
126038823  nucleolar protein 58 [KO:K14565]
126047770  NHP2-like protein 1 [KO:K12845]
126050164  H/ACA ribonucleoprotein complex subunit DKC1 isoform X1 [KO:K11131] [EC:5.4.99.-]
126050888  H/ACA ribonucleoprotein complex subunit 2 [KO:K11129]
126044751  H/ACA ribonucleoprotein complex subunit 1 isoform X1 [KO:K11128]
126037217  H/ACA ribonucleoprotein complex subunit 3 [KO:K11130]
126049360  rRNA-processing protein FCF1 homolog [KO:K14566]
126050398  U3 small nucleolar RNA-associated protein 14 homolog A [KO:K14567]
126048569  ribonuclease 3 isoform X1 [KO:K03685] [EC:3.1.26.3]
126049019  ribosomal RNA small subunit methyltransferase NEP1 [KO:K14568] [EC:2.1.1.260]
126042562  ribosome biogenesis protein BMS1 homolog isoform X1 [KO:K14569]
126047015  RNA cytidine acetyltransferase [KO:K14521] [EC:2.3.1.-]
126036434  RNA 3'-terminal phosphate cyclase-like protein [KO:K11108]
126049322  ribonucleases P/MRP protein subunit POP1 [KO:K01164] [EC:3.1.26.5]
126037762  ribonuclease P protein subunit p38 [KO:K14523] [EC:3.1.26.5]
126041259  ribonuclease P protein subunit p29 [KO:K03538] [EC:3.1.26.5]
126040520  ribonuclease P/MRP protein subunit POP5 [KO:K03537] [EC:3.1.26.5]
126043800  ribonuclease P protein subunit p25 isoform X1 [KO:K14525] [EC:3.1.26.5]
126036364  ribonuclease P protein subunit p25-like protein [KO:K14525] [EC:3.1.26.5]
126042485  ribonuclease P protein subunit p30 [KO:K03539] [EC:3.1.26.5]
126048724  ribonuclease P protein subunit p40 isoform X1 [KO:K14530] [EC:3.1.26.5]
126051937  uncharacterized protein LOC126051937 [KO:K14530] [EC:3.1.26.5]
126034036  RNA exonuclease 5 isoform X1 [KO:K14570] [EC:3.1.-.-]
126041991  RNA exonuclease 1 homolog isoform X1 [KO:K14570] [EC:3.1.-.-]
126038129  oligoribonuclease, mitochondrial [KO:K13288] [EC:3.1.-.-]
126039183  5'-3' exoribonuclease 1 isoform X1 [KO:K12618] [EC:3.1.13.-]
126038824  5'-3' exoribonuclease 2 isoform X1 [KO:K12619] [EC:3.1.13.-]
126037891  GTP-binding protein 4 [KO:K06943]
126047483  nucleolar GTP-binding protein 2 isoform X1 [KO:K14537]
126049653  guanine nucleotide-binding protein-like 3 [KO:K14538]
126035212  guanine nucleotide-binding protein-like 3-like protein [KO:K14538]
126052673  nuclear valosin-containing protein-like isoform X1 [KO:K14571]
126046217  midasin isoform X1 [KO:K14572]
126044481  RNA-binding protein 28 [KO:K14573]
126041329  RNA-binding protein NOB1 [KO:K11883]
126040726  GTP-binding nuclear protein Ran [KO:K07936]
126038807  exportin-1 isoform X1 [KO:K14290]
126039171  60S ribosomal export protein NMD3 [KO:K07562]
126053409  nuclear RNA export factor 1 [KO:K14284]
126050226  NTF2-related export protein 2 isoform X1 [KO:K14285]
126045914  eukaryotic translation initiation factor 6 [KO:K03264]
126039948  ribosome maturation protein SBDS [KO:K14574]
126043713  elongation factor-like GTPase 1 [KO:K14536] [EC:3.6.5.-]
126039673  large subunit GTPase 1 homolog [KO:K14539] [EC:3.6.1.-]
126044710  LOW QUALITY PROTEIN: ATPase family protein 2 homolog [KO:K14575]
126035992  adenylate kinase isoenzyme 6 [KO:K18532] [EC:2.7.4.3]
126048650  serine/threonine-protein kinase RIO1 isoform X1 [KO:K07178] [EC:2.7.11.1]
126049078  serine/threonine-protein kinase RIO2 isoform X1 [KO:K07179] [EC:2.7.11.1]
126037061  18S ribosomal RNA [KO:K01979]
126034701  18S ribosomal RNA [KO:K01979]
126034700  5.8S ribosomal RNA [KO:K01986]
126034749  28S ribosomal RNA [KO:K01982]
126040107  small nucleolar RNA U3 [KO:K14483]
Reference
  Authors
Freed EF, Bleichert F, Dutca LM, Baserga SJ
  Title
When ribosomes go bad: diseases of ribosome biogenesis.
  Journal
Mol Biosyst 6:481-93 (2010)
DOI:10.1039/b919670f
Reference
  Authors
Perez-Fernandez J, Roman A, De Las Rivas J, Bustelo XR, Dosil M
  Title
The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism.
  Journal
Mol Cell Biol 27:5414-29 (2007)
DOI:10.1128/MCB.00380-07
Reference
  Authors
Strunk BS, Karbstein K
  Title
Powering through ribosome assembly.
  Journal
RNA 15:2083-104 (2009)
DOI:10.1261/rna.1792109
Reference
  Authors
Granneman S, Baserga SJ
  Title
Ribosome biogenesis: of knobs and RNA processing.
  Journal
Exp Cell Res 296:43-50 (2004)
DOI:10.1016/j.yexcr.2004.03.016
Reference
  Authors
Kressler D, Hurt E, Bassler J
  Title
Driving ribosome assembly.
  Journal
Biochim Biophys Acta 1803:673-83 (2010)
DOI:10.1016/j.bbamcr.2009.10.009
Related
pathway
agen03010  Ribosome
KO pathway
ko03008   
LinkDB

DBGET integrated database retrieval system