KEGG   PATHWAY: agrg00020
Entry
agrg00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Anthonomus grandis grandis (boll weevil)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
agrg00020  Citrate cycle (TCA cycle)
agrg00020

Module
agrg_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:agrg00020]
agrg_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:agrg00020]
agrg_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:agrg00020]
agrg_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:agrg00020]
agrg_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:agrg00020]
Other DBs
GO: 0006099
Organism
Anthonomus grandis grandis (boll weevil) [GN:agrg]
Gene
126743829  probable citrate synthase 2, mitochondrial [KO:K01647] [EC:2.3.3.1]
126750150  ATP-citrate synthase isoform X1 [KO:K01648] [EC:2.3.3.8]
126744836  cytoplasmic aconitate hydratase-like isoform X1 [KO:K01681] [EC:4.2.1.3]
126737139  probable aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
126745753  uncharacterized protein LOC126745753 [KO:K00031] [EC:1.1.1.42]
126742095  isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
126745050  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
126745243  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
126746041  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial [KO:K00030] [EC:1.1.1.41]
126748728  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
126733905  probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
126745678  2-oxoglutarate dehydrogenase complex component E1-like [KO:K00164] [EC:1.2.4.2]
126743534  2-oxoglutarate dehydrogenase complex component E1 isoform X1 [KO:K00164] [EC:1.2.4.2]
126736008  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
126736058  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
126748917  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
126741329  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial-like [KO:K01899] [EC:6.2.1.4 6.2.1.5]
126736060  succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
126743735  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
126746811  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
126743385  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like isoform X1 [KO:K00234] [EC:1.3.5.1]
126742335  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
126743889  succinate dehydrogenase [ubiquinone] iron-sulfur subunit-like [KO:K00235] [EC:1.3.5.1]
126747520  succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like [KO:K00236]
126743070  succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial [KO:K00237]
126744102  fumarate hydratase, mitochondrial-like [KO:K01679] [EC:4.2.1.2]
126744501  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
126735226  malate dehydrogenase-like [KO:K00026] [EC:1.1.1.37]
126735714  malate dehydrogenase, mitochondrial-like isoform X1 [KO:K00026] [EC:1.1.1.37]
126745362  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
126742511  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
126742976  malate dehydrogenase, mitochondrial-like isoform X1 [KO:K00026] [EC:1.1.1.37]
126747347  pyruvate carboxylase, mitochondrial isoform X1 [KO:K01958] [EC:6.4.1.1]
126736670  phosphoenolpyruvate carboxykinase [GTP]-like isoform X1 [KO:K01596] [EC:4.1.1.32]
126735505  pyruvate dehydrogenase E1 component subunit alpha type II, mitochondrial-like isoform X1 [KO:K00161] [EC:1.2.4.1]
126747517  probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [KO:K00161] [EC:1.2.4.1]
126747519  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
126737584  pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
126738063  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
agrg00010  Glycolysis / Gluconeogenesis
agrg00053  Ascorbate and aldarate metabolism
agrg00061  Fatty acid biosynthesis
agrg00062  Fatty acid elongation
agrg00071  Fatty acid degradation
agrg00190  Oxidative phosphorylation
agrg00220  Arginine biosynthesis
agrg00250  Alanine, aspartate and glutamate metabolism
agrg00280  Valine, leucine and isoleucine degradation
agrg00350  Tyrosine metabolism
agrg00470  D-Amino acid metabolism
agrg00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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