KEGG   PATHWAY: agy00020
Entry
agy00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Agromyces aureus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
agy00020  Citrate cycle (TCA cycle)
agy00020

Module
agy_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:agy00020]
agy_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:agy00020]
agy_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:agy00020]
agy_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:agy00020]
agy_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:agy00020]
Other DBs
GO: 0006099
Organism
Agromyces aureus [GN:agy]
Gene
ATC03_07375  type II citrate synthase [KO:K01647] [EC:2.3.3.1]
ATC03_09235  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
ATC03_05910  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
ATC03_13855  kgd; alpha-ketoglutarate decarboxylase [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
ATC03_10395  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
ATC03_17945  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
ATC03_05810  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
ATC03_05805  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
ATC03_14420  fumarate reductase [KO:K00239] [EC:1.3.5.1]
ATC03_10660  succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
ATC03_14425  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
ATC03_14410  succinate dehydrogenase [KO:K00241]
ATC03_14415  succinate dehydrogenase [KO:K00242]
ATC03_07055  aspA; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
ATC03_16005  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
ATC03_05535  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
ATC03_11650  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
ATC03_14555  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
ATC03_10490  alpha-ketoglutarate dehydrogenase [KO:K00163] [EC:1.2.4.1]
ATC03_10400  dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
agy00010  Glycolysis / Gluconeogenesis
agy00053  Ascorbate and aldarate metabolism
agy00061  Fatty acid biosynthesis
agy00062  Fatty acid elongation
agy00071  Fatty acid degradation
agy00190  Oxidative phosphorylation
agy00220  Arginine biosynthesis
agy00250  Alanine, aspartate and glutamate metabolism
agy00280  Valine, leucine and isoleucine degradation
agy00350  Tyrosine metabolism
agy00470  D-Amino acid metabolism
agy00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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