KEGG   PATHWAY: ahal00020
Entry
ahal00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Alkalicoccus halolimnae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ahal00020  Citrate cycle (TCA cycle)
ahal00020

Module
ahal_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ahal00020]
ahal_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ahal00020]
ahal_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ahal00020]
ahal_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ahal00020]
ahal_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ahal00020]
Other DBs
GO: 0006099
Organism
Alkalicoccus halolimnae [GN:ahal]
Gene
FTX54_011435  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
FTX54_012755  citZ; citrate synthase [KO:K01647] [EC:2.3.3.1]
FTX54_008960  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
FTX54_010545  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
FTX54_001185  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
FTX54_012750  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
FTX54_008390  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
FTX54_008395  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
FTX54_007490  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FTX54_009980  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FTX54_009355  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
FTX54_009360  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
FTX54_012495  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
FTX54_002470  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
FTX54_012490  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
FTX54_012500  succinate dehydrogenase cytochrome b558 subunit [KO:K00241]
FTX54_008355  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
FTX54_012745  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
FTX54_016525  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
FTX54_010875  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
FTX54_013265  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
FTX54_009995  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
FTX54_009990  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
FTX54_009985  dihydrolipoamide acetyltransferase family protein [KO:K00627] [EC:2.3.1.12]
FTX54_016510  dihydrolipoamide acetyltransferase family protein [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ahal00010  Glycolysis / Gluconeogenesis
ahal00053  Ascorbate and aldarate metabolism
ahal00061  Fatty acid biosynthesis
ahal00071  Fatty acid degradation
ahal00190  Oxidative phosphorylation
ahal00220  Arginine biosynthesis
ahal00250  Alanine, aspartate and glutamate metabolism
ahal00280  Valine, leucine and isoleucine degradation
ahal00350  Tyrosine metabolism
ahal00470  D-Amino acid metabolism
ahal00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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