KEGG   PATHWAY: ahw00020
Entry
ahw00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Actinomyces howellii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ahw00020  Citrate cycle (TCA cycle)
ahw00020

Module
ahw_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ahw00020]
ahw_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ahw00020]
ahw_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ahw00020]
ahw_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ahw00020]
Other DBs
GO: 0006099
Organism
Actinomyces howellii [GN:ahw]
Gene
NCTC11636_02270  gltA2; Citrate synthase 1 [KO:K01647] [EC:2.3.3.1]
NCTC11636_00507  acnA; Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
NCTC11636_02430  icd; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
NCTC11636_02448  kgd; 2-oxoglutarate decarboxylase [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
NCTC11636_00241  pdhD; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NCTC11636_02521  sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
NCTC11636_02520  sucC; Succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
NCTC11636_01071  frdA_1; Fumarate reductase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
NCTC11636_02275  frdA_2; Fumarate reductase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
NCTC11636_01070  frdB_1; Fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
NCTC11636_02274  frdB_2; Fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
NCTC11636_01072  succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family [KO:K00241]
NCTC11636_02276  Succinate dehydrogenase/fumarate reductase, cytochrome b subunit [KO:K00241]
NCTC11636_02564  fumC-1; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
NCTC11636_02528  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
NCTC11636_01431  pckG; Phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
NCTC11636_00195  aceE; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
NCTC11636_00240  dlaT; Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
NCTC11636_00500  porA; Pyruvate synthase subunit porA [KO:K00169] [EC:1.2.7.1]
NCTC11636_00499  porB; Pyruvate synthase subunit porB [KO:K00170] [EC:1.2.7.1]
NCTC11636_00501  porC; Pyruvate synthase subunit porC [KO:K00172] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ahw00010  Glycolysis / Gluconeogenesis
ahw00053  Ascorbate and aldarate metabolism
ahw00061  Fatty acid biosynthesis
ahw00190  Oxidative phosphorylation
ahw00220  Arginine biosynthesis
ahw00250  Alanine, aspartate and glutamate metabolism
ahw00280  Valine, leucine and isoleucine degradation
ahw00350  Tyrosine metabolism
ahw00470  D-Amino acid metabolism
ahw00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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