KEGG   PATHWAY: aih00020
Entry
aih00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Actinoplanes ianthinogenes
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
aih00020  Citrate cycle (TCA cycle)
aih00020

Module
aih_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:aih00020]
aih_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:aih00020]
aih_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:aih00020]
aih_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:aih00020]
aih_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:aih00020]
Other DBs
GO: 0006099
Organism
Actinoplanes ianthinogenes [GN:aih]
Gene
Aiant_10910  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
Aiant_46350  citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
Aiant_68220  citrate synthase [KO:K01647] [EC:2.3.3.1]
Aiant_71390  citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
Aiant_71400  citrate synthase [KO:K01647] [EC:2.3.3.1]
Aiant_62430  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
Aiant_50620  icd1; isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
Aiant_33810  kgd; alpha-ketoglutarate decarboxylase [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
Aiant_58730  pdhD_2; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
Aiant_64800  pdhD_3; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
Aiant_37100  oxidoreductase [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Aiant_37110  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Aiant_50570  succinate--CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
Aiant_50560  sucC1; succinate--CoA ligase [ADP-forming] subunit beta 1 [KO:K01903] [EC:6.2.1.5]
Aiant_34980  sdhA_1; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Aiant_60550  sdhA_2; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Aiant_34990  hypothetical protein [KO:K00240] [EC:1.3.5.1]
Aiant_60540  sdhB; succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
Aiant_60560  succinate dehydrogenase [KO:K00241]
Aiant_38790  fumarate hydratase class I [KO:K01676] [EC:4.2.1.2]
Aiant_38760  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
Aiant_69560  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Aiant_35640  pckG; phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
Aiant_57760  pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
Aiant_58720  sucB; dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
aih00010  Glycolysis / Gluconeogenesis
aih00053  Ascorbate and aldarate metabolism
aih00061  Fatty acid biosynthesis
aih00071  Fatty acid degradation
aih00190  Oxidative phosphorylation
aih00220  Arginine biosynthesis
aih00250  Alanine, aspartate and glutamate metabolism
aih00280  Valine, leucine and isoleucine degradation
aih00350  Tyrosine metabolism
aih00470  D-Amino acid metabolism
aih00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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