KEGG   PATHWAY: aip00020
Entry
aip00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Arachis ipaensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
aip00020  Citrate cycle (TCA cycle)
aip00020

Module
aip_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:aip00020]
aip_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:aip00020]
aip_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:aip00020]
aip_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:aip00020]
aip_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:aip00020]
Other DBs
GO: 0006099
Organism
Arachis ipaensis [GN:aip]
Gene
107608548  citrate synthase, glyoxysomal [KO:K01647] [EC:2.3.3.1]
107611284  citrate synthase, mitochondrial isoform X1 [KO:K01647] [EC:2.3.3.1]
107632806  citrate synthase, glyoxysomal [KO:K01647] [EC:2.3.3.1]
107638976  ATP-citrate synthase beta chain protein 1 [KO:K01648] [EC:2.3.3.8]
107643345  ATP-citrate synthase alpha chain protein 1 [KO:K01648] [EC:2.3.3.8]
107639214  ATP-citrate synthase beta chain protein 1 [KO:K01648] [EC:2.3.3.8]
107645974  ATP-citrate synthase alpha chain protein 2 [KO:K01648] [EC:2.3.3.8]
107642540  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
107612826  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
107629965  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
107644530  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
107608718  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
107613515  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
107626488  isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
107622140  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
107615988  isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial [KO:K00030] [EC:1.1.1.41]
107608876  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial [KO:K00030] [EC:1.1.1.41]
107642519  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
107612601  isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial [KO:K00030] [EC:1.1.1.41]
107635647  2-oxoglutarate dehydrogenase, mitochondrial [KO:K00164] [EC:1.2.4.2]
107635648  2-oxoglutarate dehydrogenase, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
107616226  2-oxoglutarate dehydrogenase, mitochondrial [KO:K00164] [EC:1.2.4.2]
107646218  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
107638634  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial isoform X1 [KO:K00658] [EC:2.3.1.61]
107608755  LOW QUALITY PROTEIN: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial [KO:K00658] [EC:2.3.1.61]
107639123  dihydrolipoyl dehydrogenase 2, chloroplastic [KO:K00382] [EC:1.8.1.4]
107639585  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
107644599  succinate--CoA ligase [ADP-forming] subunit alpha-2, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
107625004  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
107642871  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
107647454  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [KO:K00235] [EC:1.3.5.1]
107635261  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [KO:K00235] [EC:1.3.5.1]
107629966  uncharacterized protein LOC107629966 [KO:K00236]
107608962  succinate dehydrogenase subunit 4, mitochondrial [KO:K25801]
107625186  uncharacterized protein LOC107625186 isoform X2 [KO:K25801]
107638323  uncharacterized protein LOC107638323 [KO:K25801]
107628295  fumarate hydratase 1, mitochondrial [KO:K01679] [EC:4.2.1.2]
107624813  malate dehydrogenase, cytoplasmic isoform X1 [KO:K00025] [EC:1.1.1.37]
107617411  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
107617412  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
107630073  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
107642662  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
107626268  malate dehydrogenase 2, peroxisomal [KO:K00026] [EC:1.1.1.37]
107633125  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
107606247  phosphoenolpyruvate carboxykinase (ATP) isoform X1 [KO:K01610] [EC:4.1.1.49]
107642311  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
107646124  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic [KO:K00161] [EC:1.2.4.1]
107624360  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic [KO:K00161] [EC:1.2.4.1]
107631937  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [KO:K00161] [EC:1.2.4.1]
107643470  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial isoform X1 [KO:K00161] [EC:1.2.4.1]
107618419  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial [KO:K00162] [EC:1.2.4.1]
107634993  LOW QUALITY PROTEIN: pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
107632052  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [KO:K00162] [EC:1.2.4.1]
107623434  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [KO:K00162] [EC:1.2.4.1]
107618800  LOW QUALITY PROTEIN: dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
107618348  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
107617291  dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
107618076  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
aip00010  Glycolysis / Gluconeogenesis
aip00053  Ascorbate and aldarate metabolism
aip00061  Fatty acid biosynthesis
aip00062  Fatty acid elongation
aip00071  Fatty acid degradation
aip00190  Oxidative phosphorylation
aip00220  Arginine biosynthesis
aip00250  Alanine, aspartate and glutamate metabolism
aip00280  Valine, leucine and isoleucine degradation
aip00350  Tyrosine metabolism
aip00470  D-Amino acid metabolism
aip00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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