KEGG   PATHWAY: ajc00020
Entry
ajc00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Anneissia japonica (feather star)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ajc00020  Citrate cycle (TCA cycle)
ajc00020

Module
ajc_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ajc00020]
ajc_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ajc00020]
ajc_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ajc00020]
ajc_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ajc00020]
ajc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ajc00020]
Other DBs
GO: 0006099
Organism
Anneissia japonica (feather star) [GN:ajc]
Gene
117125290  probable citrate synthase 1, mitochondrial [KO:K01647] [EC:2.3.3.1]
117106003  ATP-citrate synthase-like isoform X1 [KO:K01648] [EC:2.3.3.8]
117120570  aconitate hydratase, mitochondrial-like [KO:K01681] [EC:4.2.1.3]
117122625  cytoplasmic aconitate hydratase-like isoform X1 [KO:K01681] [EC:4.2.1.3]
117107982  isocitrate dehydrogenase [NADP], mitochondrial-like [KO:K00031] [EC:1.1.1.42]
117110729  isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
117119342  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial-like isoform X1 [KO:K00030] [EC:1.1.1.41]
117102292  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
117121839  2-oxoglutarate dehydrogenase, mitochondrial-like isoform X1 [KO:K00164] [EC:1.2.4.2]
117104424  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
117108581  dihydrolipoyl dehydrogenase, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
117123668  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial-like [KO:K01899] [EC:6.2.1.4 6.2.1.5]
117120771  succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
117124772  LOW QUALITY PROTEIN: succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
117101349  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
117100585  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
117118746  succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like [KO:K00236]
117111689  succinate dehydrogenase [ubiquinone] cytochrome b small subunit B, mitochondrial-like isoform X1 [KO:K00237]
117101764  fumarate hydratase class I, aerobic-like [KO:K01676] [EC:4.2.1.2]
117104408  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
117116317  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
117116098  pyruvate carboxylase, mitochondrial-like [KO:K01958] [EC:6.4.1.1]
117124043  phosphoenolpyruvate carboxykinase, cytosolic [GTP]-like [KO:K01596] [EC:4.1.1.32]
117118704  probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [KO:K00161] [EC:1.2.4.1]
117101405  pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
117124632  pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
117103356  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial-like isoform X1 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ajc00010  Glycolysis / Gluconeogenesis
ajc00053  Ascorbate and aldarate metabolism
ajc00061  Fatty acid biosynthesis
ajc00062  Fatty acid elongation
ajc00071  Fatty acid degradation
ajc00190  Oxidative phosphorylation
ajc00220  Arginine biosynthesis
ajc00250  Alanine, aspartate and glutamate metabolism
ajc00280  Valine, leucine and isoleucine degradation
ajc00350  Tyrosine metabolism
ajc00470  D-Amino acid metabolism
ajc00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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