KEGG   PATHWAY: alk00020
Entry
alk00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Poseidonibacter lekithochrous
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
alk00020  Citrate cycle (TCA cycle)
alk00020

Module
alk_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:alk00020]
alk_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:alk00020]
alk_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:alk00020]
Other DBs
GO: 0006099
Organism
Poseidonibacter lekithochrous [GN:alk]
Gene
ALEK_2970  citrate synthase [KO:K01647] [EC:2.3.3.1]
ALEK_3022  prpC; 2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
ALEK_2188  acnA; aconitate hydratase 1 [KO:K27802] [EC:4.2.1.3 4.2.1.99]
ALEK_1478  acnB; aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
ALEK_2123  icd; isocitrate dehydrogenase, monomeric [KO:K00031] [EC:1.1.1.42]
ALEK_2475  oorA; 2-oxoglutarate:acceptor oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
ALEK_2476  oorB; 2-oxoglutarate:acceptor oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
ALEK_2477  oorC; 2-oxoglutarate:acceptor oxidoreductase, gamma subunit [KO:K00177] [EC:1.2.7.3]
ALEK_2474  oorD; 2-oxoglutarate:acceptor oxidoreductase, delta subunit [KO:K00176] [EC:1.2.7.3]
ALEK_2980  frdA; fumarate reductase, flavoprotein subunit [KO:K00233] [EC:1.3.5.1 7.1.1.12]
ALEK_2981  frdB; fumarate reductase, iron-sulfur subunit [KO:K25995] [EC:1.3.5.1 7.1.1.12]
ALEK_2979  frdC; fumarate reductase, cytochrome b subunit [KO:K25996]
ALEK_2816  fumA; fumarate hydratase, class I [KO:K01676] [EC:4.2.1.2]
ALEK_1470  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
ALEK_2124  mdh; malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
ALEK_0786  mqo; malate:quinone-oxidoreductase [KO:K00116] [EC:1.1.5.4]
ALEK_1829  oadA; oxaloacetate decarboxylase, alpha subunit [KO:K01960] [EC:6.4.1.1]
ALEK_1827  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
ALEK_0218  porA; pyruvate:ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
ALEK_0217  porB; pyruvate:ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
ALEK_0220  porG; pyruvate:ferredoxin oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
ALEK_0219  porD; pyruvate:ferredoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
alk00010  Glycolysis / Gluconeogenesis
alk00053  Ascorbate and aldarate metabolism
alk00061  Fatty acid biosynthesis
alk00071  Fatty acid degradation
alk00190  Oxidative phosphorylation
alk00220  Arginine biosynthesis
alk00250  Alanine, aspartate and glutamate metabolism
alk00280  Valine, leucine and isoleucine degradation
alk00350  Tyrosine metabolism
alk00470  D-Amino acid metabolism
alk00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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