KEGG   PATHWAY: alti00020
Entry
alti00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Constantimarinum furrinae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
alti00020  Citrate cycle (TCA cycle)
alti00020

Module
alti_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:alti00020]
alti_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:alti00020]
alti_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:alti00020]
alti_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:alti00020]
alti_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:alti00020]
Other DBs
GO: 0006099
Organism
Constantimarinum furrinae [GN:alti]
Gene
ALE3EI_1505  Citrate synthase [KO:K01647] [EC:2.3.3.1]
ALE3EI_0052  Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
ALE3EI_0017  Monomeric isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
ALE3EI_1164  2-oxoglutarate dehydrogenase, E1 component [KO:K00164] [EC:1.2.4.2]
ALE3EI_1165  2-oxoglutarate dehydrogenase E2 component [KO:K00658] [EC:2.3.1.61]
ALE3EI_1376  pyruvate dehydrogenase E2 component [KO:K00658] [EC:2.3.1.61]
ALE3EI_1745  2-oxoglutarate dehydrogenase E2 component [KO:K00658] [EC:2.3.1.61]
ALE3EI_2347  Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
ALE3EI_2504  Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
ALE3EI_2144  Succinyl-CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
ALE3EI_1781  succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
ALE3EI_0746  succinate dehydrogenase / fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
ALE3EI_0745  succinate dehydrogenase / fumarate reductase, iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
ALE3EI_0747  succinate dehydrogenase / fumarate reductase, cytochrome b subunit [KO:K00241]
ALE3EI_2052  Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
ALE3EI_1553  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
ALE3EI_0651  Phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
ALE3EI_1433  pyruvate dehydrogenase E1 component alpha subunit [KO:K00161] [EC:1.2.4.1]
ALE3EI_1346  pyruvate dehydrogenase E1 component beta subunit [KO:K00162] [EC:1.2.4.1]
ALE3EI_1434  pyruvate dehydrogenase E2 component [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
alti00010  Glycolysis / Gluconeogenesis
alti00053  Ascorbate and aldarate metabolism
alti00061  Fatty acid biosynthesis
alti00071  Fatty acid degradation
alti00190  Oxidative phosphorylation
alti00220  Arginine biosynthesis
alti00250  Alanine, aspartate and glutamate metabolism
alti00280  Valine, leucine and isoleucine degradation
alti00350  Tyrosine metabolism
alti00470  D-Amino acid metabolism
alti00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system