KEGG   PATHWAY: alut00020
Entry
alut00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Algibacter luteus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
alut00020  Citrate cycle (TCA cycle)
alut00020

Module
alut_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:alut00020]
alut_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:alut00020]
alut_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:alut00020]
alut_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:alut00020]
alut_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:alut00020]
Other DBs
GO: 0006099
Organism
Algibacter luteus [GN:alut]
Gene
O5O44_04265  citrate synthase [KO:K01647] [EC:2.3.3.1]
O5O44_07105  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
O5O44_07100  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
O5O44_06865  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
O5O44_00260  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
O5O44_00255  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
O5O44_12425  dihydrolipoamide acetyltransferase family protein [KO:K00658] [EC:2.3.1.61]
O5O44_08065  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
O5O44_11330  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
O5O44_09505  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
O5O44_06510  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
O5O44_02730  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
O5O44_02735  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
O5O44_02725  succinate dehydrogenase cytochrome b subunit [KO:K00241]
O5O44_09955  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
O5O44_04485  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
O5O44_03070  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
O5O44_03855  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
O5O44_15925  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
O5O44_03860  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
alut00010  Glycolysis / Gluconeogenesis
alut00053  Ascorbate and aldarate metabolism
alut00061  Fatty acid biosynthesis
alut00071  Fatty acid degradation
alut00190  Oxidative phosphorylation
alut00220  Arginine biosynthesis
alut00250  Alanine, aspartate and glutamate metabolism
alut00280  Valine, leucine and isoleucine degradation
alut00350  Tyrosine metabolism
alut00470  D-Amino acid metabolism
alut00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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