KEGG   PATHWAY: alx00020
Entry
alx00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Allobranchiibius sp. GilTou73
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
alx00020  Citrate cycle (TCA cycle)
alx00020

Module
alx_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:alx00020]
alx_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:alx00020]
alx_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:alx00020]
alx_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:alx00020]
Other DBs
GO: 0006099
Organism
Allobranchiibius sp. GilTou73 [GN:alx]
Gene
LVQ62_07790  citrate synthase [KO:K01647] [EC:2.3.3.1]
LVQ62_10310  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
LVQ62_10315  citrate synthase [KO:K01647] [EC:2.3.3.1]
LVQ62_10805  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
LVQ62_07855  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
LVQ62_08405  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
LVQ62_10355  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LVQ62_13935  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LVQ62_06710  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
LVQ62_06705  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
LVQ62_16970  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
LVQ62_16975  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
LVQ62_08120  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
LVQ62_08125  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
LVQ62_08115  succinate dehydrogenase cytochrome b subunit [KO:K00241]
LVQ62_07490  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
LVQ62_02980  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
LVQ62_07845  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
LVQ62_16015  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
LVQ62_14185  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
LVQ62_10345  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
alx00010  Glycolysis / Gluconeogenesis
alx00053  Ascorbate and aldarate metabolism
alx00061  Fatty acid biosynthesis
alx00071  Fatty acid degradation
alx00190  Oxidative phosphorylation
alx00220  Arginine biosynthesis
alx00250  Alanine, aspartate and glutamate metabolism
alx00280  Valine, leucine and isoleucine degradation
alx00350  Tyrosine metabolism
alx00470  D-Amino acid metabolism
alx00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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