KEGG   PATHWAY: amas00020
Entry
amas00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Actinomyces massiliensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
amas00020  Citrate cycle (TCA cycle)
amas00020

Module
amas_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:amas00020]
amas_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:amas00020]
amas_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:amas00020]
amas_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:amas00020]
Other DBs
GO: 0006099
Organism
Actinomyces massiliensis [GN:amas]
Gene
QU670_11635  citrate synthase [KO:K01647] [EC:2.3.3.1]
QU670_07370  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
QU670_10650  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
QU670_10505  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
QU670_09145  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
QU670_10240  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
QU670_10245  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
QU670_03825  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
QU670_03830  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
QU670_03820  succinate dehydrogenase cytochrome b subunit [KO:K00241]
QU670_09900  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
QU670_10210  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
QU670_01890  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
QU670_09360  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
QU670_09150  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
amas00010  Glycolysis / Gluconeogenesis
amas00061  Fatty acid biosynthesis
amas00190  Oxidative phosphorylation
amas00220  Arginine biosynthesis
amas00250  Alanine, aspartate and glutamate metabolism
amas00280  Valine, leucine and isoleucine degradation
amas00350  Tyrosine metabolism
amas00470  D-Amino acid metabolism
amas00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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