KEGG   PATHWAY: amex04744
Entry
amex04744                   Pathway                                
Name
Phototransduction - Astyanax mexicanus (Mexican tetra)
Description
Phototransduction is a biochemical process by which the photoreceptor cells generate electrical signals in response to captured photons. The vertebrate cascade starts with the absorption of photons by the photoreceptive pigments, the rhodopsins, which consist of a membrane embedded chromophore, 11-cis-retinal, and a G-protein-coupled receptor, opsin. The photon isomerizes 11-cis-retinal to all-trans-retinal which induces a structural change that activates the opsin. This triggers hydrolysis of cGMP by activating a transducinphosphodiesterase 6 (PDE6) cascade, which results in closure of the cGMP-gated cation channels (CNG) in the plasma membrane and membrane hyperpolarization. The hyperpolarization of the membrane potential of the photoreceptor cell modulates the release of neurotransmitters to downstream cells. Recovery from light involves the deactivation of the light- activated intermediates: photolyzed rhodopsin is phosphorylated by rhodopsin kinase (RK) and subsequently capped off by arrestin; GTP-binding transducin alpha subunit deactivates through a process that is stimulated by RGS9.
Class
Organismal Systems; Sensory system
Pathway map
amex04744  Phototransduction
amex04744

Other DBs
GO: 0009586
Organism
Astyanax mexicanus (Mexican tetra) [GN:amex]
Gene
103041330  green-sensitive opsin-3 [KO:K04250]
103040284  rho; rhodopsin [KO:K04250]
103027557  rhodopsin [KO:K04250]
103047117  rhol; rhodopsin, like [KO:K04250]
103026853  grk7b; rhodopsin kinase grk7-b [KO:K00909] [EC:2.7.11.14]
103038643  grk1b; rhodopsin kinase GRK1b [KO:K00909] [EC:2.7.11.14]
103037579  grk7a; rhodopsin kinase grk7a [KO:K00909] [EC:2.7.11.14]
103024262  grk1a; rhodopsin kinase GRK1 [KO:K00909] [EC:2.7.11.14]
125785707  LOW QUALITY PROTEIN: rhodopsin kinase GRK1-like [KO:K00909] [EC:2.7.11.14]
125785795  LOW QUALITY PROTEIN: rhodopsin kinase GRK1-like [KO:K00909] [EC:2.7.11.14]
103046004  rcvrnb; recoverin b isoform X1 [KO:K13764]
103033761  rcvrn2; recoverin 2 [KO:K13764]
103032535  rcvrna; recoverin a [KO:K13764]
103028703  rcvrn3; recoverin 3 [KO:K13764]
111192623  sagb; S-arrestin b isoform X1 [KO:K19627]
103037569  gnat1; guanine nucleotide-binding protein G(t) subunit alpha-1 [KO:K04631]
103044197  gnb1a; guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 [KO:K04536]
103023031  gnb1b; guanine nucleotide binding protein (G protein), beta polypeptide 1b [KO:K04536]
103023645  gngt1; guanine nucleotide-binding protein G(T) subunit gamma-T1 [KO:K04548]
103026135  rgs9a; regulator of G-protein signaling 9a [KO:K13765]
103038023  pde6a; rod cGMP-specific 3',5'-cyclic phosphodiesterase subunit alpha [KO:K08718] [EC:3.1.4.35]
103030922  pde6gb; phosphodiesterase 6G, cGMP-specific, rod, gamma, paralog b [KO:K13759]
103026630  retinal cone rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit gamma [KO:K13759]
103038304  gucy2d; retinal guanylyl cyclase 1 [KO:K12321] [EC:4.6.1.2]
103038783  gucy2f; retinal guanylyl cyclase 2 [KO:K12322] [EC:4.6.1.2]
103025043  gc2; retinal guanylyl cyclase 2 [KO:K12322] [EC:4.6.1.2]
103026799  retinal guanylyl cyclase 2 isoform X1 [KO:K12322] [EC:4.6.1.2]
111195752  guca1g; guanylate cyclase activator 1g [KO:K08328]
111197051  guanylyl cyclase-activating protein 2-like [KO:K08328]
103045930  guanylyl cyclase-activating protein 2 [KO:K08328]
103030821  guca1c; guanylyl cyclase-activating protein 3 [KO:K08328]
103025366  guanylyl cyclase-activating protein 2-like [KO:K08328]
103037631  guca1a; guanylyl cyclase-activating protein 1 [KO:K08328]
103035948  guca1b; guanylyl cyclase-activating protein 2 [KO:K08328]
103025981  guanylyl cyclase-activating protein 2 [KO:K08328]
107197631  guca1d; guanylate cyclase activator 1d [KO:K08328]
103029806  slc24a1; sodium/potassium/calcium exchanger 1 isoform X2 [KO:K13749]
111188412  calm1a; calmodulin-1a [KO:K02183]
103023587  calm3b; calmodulin 3b (phosphorylase kinase, delta) [KO:K02183]
103029589  calml4a; calmodulin-like protein 4a [KO:K02183]
103024819  calm3a; calmodulin 3a (phosphorylase kinase, delta) [KO:K02183]
103032770  calml4b; calmodulin-like protein 4 [KO:K02183]
103037741  calm1b; calmodulin-1b [KO:K02183]
103028596  calm2a; calmodulin 2a (phosphorylase kinase, delta) [KO:K02183]
103042400  calm2b; calmodulin 2b, (phosphorylase kinase, delta) [KO:K02183]
103025738  calglandulin [KO:K02183]
103042564  cnga1a; cyclic nucleotide gated channel subunit alpha 1a [KO:K04948]
103037786  cnga1b; cGMP-gated cation channel alpha-1 [KO:K04948]
103043601  cyclic nucleotide-gated cation channel beta-1 [KO:K04952]
Compound
C00076  Calcium cation
C00144  GMP
C00238  Potassium cation
C00305  Magnesium cation
C00376  Retinal
C00942  3',5'-Cyclic GMP
C01330  Sodium cation
C02110  11-cis-Retinal
Reference
  Authors
Yau KW, Hardie RC
  Title
Phototransduction motifs and variations.
  Journal
Cell 139:246-64 (2009)
DOI:10.1016/j.cell.2009.09.029
Reference
  Authors
Koch KW, Duda T, Sharma RK
  Title
Photoreceptor specific guanylate cyclases in vertebrate phototransduction.
  Journal
Mol Cell Biochem 230:97-106 (2002)
Reference
PMID:9803480
  Authors
Jindrova H
  Title
Vertebrate phototransduction: activation, recovery, and adaptation.
  Journal
Physiol Res 47:155-68 (1998)
Reference
  Authors
Ebrey T, Koutalos Y
  Title
Vertebrate photoreceptors.
  Journal
Prog Retin Eye Res 20:49-94 (2001)
DOI:10.1016/S1350-9462(00)00014-8
Reference
  Authors
Pepe IM
  Title
Recent advances in our understanding of rhodopsin and phototransduction.
  Journal
Prog Retin Eye Res 20:733-59 (2001)
DOI:10.1016/S1350-9462(01)00013-1
Reference
  Authors
Kramer RH, Molokanova E
  Title
Modulation of cyclic-nucleotide-gated channels and regulation of vertebrate phototransduction.
  Journal
J Exp Biol 204:2921-31 (2001)
Reference
  Authors
Larhammar D, Nordstrom K, Larsson TA
  Title
Evolution of vertebrate rod and cone phototransduction genes.
  Journal
Philos Trans R Soc Lond B Biol Sci 364:2867-80 (2009)
DOI:10.1098/rstb.2009.0077
Reference
  Authors
Dizhoor AM, Olshevskaya EV, Peshenko IV
  Title
Mg2+/Ca2+ cation binding cycle of guanylyl cyclase activating proteins (GCAPs): role in regulation of photoreceptor guanylyl cyclase.
  Journal
Mol Cell Biochem 334:117-24 (2010)
DOI:10.1007/s11010-009-0328-6
Reference
  Authors
Krizaj D, Copenhagen DR
  Title
Calcium regulation in photoreceptors.
  Journal
Front Biosci 7:d2023-44 (2002)
Reference
PMID:9893707
  Authors
Shichida Y, Imai H
  Title
Visual pigment: G-protein-coupled receptor for light signals.
  Journal
Cell Mol Life Sci 54:1299-315 (1998)
DOI:10.1007/s000180050256
Reference
PMID:9419388
  Authors
Pugh EN Jr, Duda T, Sitaramayya A, Sharma RK
  Title
Photoreceptor guanylate cyclases: a review.
  Journal
Biosci Rep 17:429-73 (1997)
DOI:10.1023/A:1027365520442
Reference
  Authors
Luo DG, Xue T, Yau KW
  Title
How vision begins: an odyssey.
  Journal
Proc Natl Acad Sci U S A 105:9855-62 (2008)
DOI:10.1073/pnas.0708405105
Reference
  Authors
Peshenko IV, Dizhoor AM
  Title
Activation and inhibition of photoreceptor guanylyl cyclase by guanylyl cyclase activating protein 1 (GCAP-1): the functional role of Mg2+/Ca2+ exchange in EF-hand domains.
  Journal
J Biol Chem 282:21645-52 (2007)
DOI:10.1074/jbc.M702368200
Reference
  Authors
Ridge KD, Abdulaev NG, Sousa M, Palczewski K
  Title
Phototransduction: crystal clear.
  Journal
Trends Biochem Sci 28:479-87 (2003)
DOI:10.1016/S0968-0004(03)00172-5
Related
pathway
amex00830  Retinol metabolism
KO pathway
ko04744   
LinkDB

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