KEGG   PATHWAY: amil04137
Entry
amil04137                   Pathway                                
Name
Mitophagy - animal - Acropora millepora
Description
Mitochondria act as the energy powerhouse of the cell, and are essential for eukaryotic cells to grow and function normally. However, deleterious byproducts of oxidative phosphorylation process called reactive oxidative species (ROS) lead to mitochondrial dysfunction. If the damage is too excessive to be repaired, such mitochondria are selectively recognized and targeted for degradation by a specific mode of autophagy, termed mitophagy. The loss of the mitochondrial membrane potential can induce mitophagy, involving the kinase PINK1 and the E3 ligase Parkin. PINK1 serves as the sensor for the mitochondrial depolarization and recruits Parkin, followed by ubiquitin-dependent recruitment of mitophagy receptors. There are also several PINK1/Parkin-independent mitophagy pathways, in which a group of LIR-containing receptors are required in response to different stimuli. Mitophagy contributes to the maintenance of a healthy mitochondrial network and the prevention of programmed cell death.
Class
Cellular Processes; Transport and catabolism
Pathway map
amil04137  Mitophagy - animal
amil04137

Other DBs
GO: 0000422
Organism
Acropora millepora [GN:amil]
Gene
114974766  activating molecule in BECN1-regulated autophagy protein 1-like [KO:K17985]
114962897  serine/threonine-protein kinase PINK1, mitochondrial-like isoform X1 [KO:K05688] [EC:2.7.11.1]
114953899  mitochondrial import receptor subunit TOM40 homolog [KO:K11518]
114962848  mitochondrial import receptor subunit TOM20 homolog [KO:K17770]
114968604  mitochondrial import receptor subunit TOM70-like [KO:K17768]
114977498  E3 ubiquitin-protein ligase parkin-like [KO:K04556] [EC:2.3.2.31]
114967773  E3 ubiquitin-protein ligase MARCH5-like isoform X1 [KO:K10660] [EC:2.3.2.27]
114974969  TNF receptor-associated factor 2-like [KO:K03173] [EC:2.3.2.27]
114976313  TNF receptor-associated factor 5-like [KO:K03173] [EC:2.3.2.27]
114965122  E3 ubiquitin-protein ligase AMFR-like [KO:K10636] [EC:2.3.2.36]
114953358  mitochondrial ubiquitin ligase activator of NFKB 1-like [KO:K15688] [EC:2.3.2.27]
114961665  LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase HUWE1-like [KO:K10592] [EC:2.3.2.26]
114972490  E3 ubiquitin-protein ligase Siah1-like [KO:K04506] [EC:2.3.2.27]
114954054  E3 ubiquitin-protein ligase arih1-like [KO:K11968] [EC:2.3.2.31]
114970970  mitofusin-2-like [KO:K06030] [EC:3.6.5.-]
114956668  mitochondrial Rho GTPase 1-A-like [KO:K07870] [EC:3.6.5.-]
114953970  ubiquitin-60S ribosomal protein L40 [KO:K02927]
114957821  ubiquitin-40S ribosomal protein S27a [KO:K02977]
114946951  tax1-binding protein 1 homolog [KO:K21347]
114947671  sequestosome-1-like isoform X1 [KO:K14381]
114951079  next to BRCA1 gene 1 protein-like [KO:K17987]
114966040  serine/threonine-protein kinase TBK1-like isoform X1 [KO:K05410] [EC:2.7.11.10]
114976364  gamma-aminobutyric acid receptor-associated protein [KO:K08341]
114955476  gamma-aminobutyric acid receptor-associated protein-like 2 [KO:K08341]
114956403  microtubule-associated proteins 1A/1B light chain 3C-like [KO:K10435]
114948372  microtubule-associated proteins 1A/1B light chain 3A-like [KO:K10435]
114967798  beclin-1-like [KO:K08334]
114971303  ubiquitin carboxyl-terminal hydrolase 8-like [KO:K11839] [EC:3.4.19.12]
114946770  ubiquitin carboxyl-terminal hydrolase 15-like [KO:K21343] [EC:3.4.19.12]
114960164  ubiquitin carboxyl-terminal hydrolase 30-like isoform X1 [KO:K11851] [EC:3.4.19.12]
114960953  apoptosis regulator R1-like [KO:K04570]
114952295  apoptosis regulator R1-like [KO:K04570]
114958252  serine/threonine-protein phosphatase PGAM5, mitochondrial-like isoform X1 [KO:K15637] [EC:3.1.3.16]
114965095  casein kinase II subunit alpha-like [KO:K03097] [EC:2.7.11.1]
114961122  casein kinase II subunit beta [KO:K03115]
114948456  FUN14 domain-containing protein 1-like [KO:K17986]
114963086  BCL2/adenovirus E1B 19 kDa protein-interacting protein 3-like isoform X1 [KO:K15464]
114971938  peptidyl-prolyl cis-trans isomerase FKBP8-like isoform X1 [KO:K09574] [EC:5.2.1.8]
114964662  sorting and assembly machinery component 50 homolog [KO:K07277]
114969526  prohibitin-2-like [KO:K17081]
114954080  metaxin-1-like [KO:K17776]
114977822  metaxin-2-like [KO:K17776]
114960373  eukaryotic translation initiation factor 2 subunit 1-like [KO:K03237]
114953195  cyclic AMP-dependent transcription factor ATF-5-like [KO:K04374]
114970322  stress-activated protein kinase JNK-like isoform X1 [KO:K04440] [EC:2.7.11.24]
114963836  transcription factor AP-1-like [KO:K04448]
114971755  transcription factor AP-1-like [KO:K04448]
114976904  transcription factor AP-1-like [KO:K04448]
114964657  ras-like protein RAS2 [KO:K07830]
114967839  hypoxia-inducible factor 1-alpha-like [KO:K08268]
114975836  forkhead box protein O-like [KO:K09408]
114972127  forkhead box protein O-like [KO:K09408]
114960900  microphthalmia-associated transcription factor-like isoform X1 [KO:K09455]
114961192  rab5 GDP/GTP exchange factor-like isoform X1 [KO:K20131]
114962506  vacuolar fusion protein MON1 homolog A-like [KO:K20195]
114976644  vacuolar fusion protein CCZ1 homolog [KO:K27045]
114976501  ras-related protein rab7 [KO:K07897]
114955882  TBC1 domain family member 15-like [KO:K20168]
114965269  TBC1 domain family member 15-like [KO:K20168]
114963053  mitochondrial fission 1 protein-like [KO:K17969]
114961510  autophagy-related protein 9A-like [KO:K17907]
114965533  dynamin-like 120 kDa protein, mitochondrial isoform X1 [KO:K17079] [EC:3.6.5.5]
114973736  transitional endoplasmic reticulum ATPase isoform X1 [KO:K13525]
Compound
C00035  GDP
C00044  GTP
Reference
  Authors
Pickrell AM, Youle RJ
  Title
The roles of PINK1, parkin, and mitochondrial fidelity in Parkinson's disease.
  Journal
Neuron 85:257-73 (2015)
DOI:10.1016/j.neuron.2014.12.007
Reference
  Authors
Durcan TM, Fon EA
  Title
The three 'P's of mitophagy: PARKIN, PINK1, and post-translational modifications.
  Journal
Genes Dev 29:989-99 (2015)
DOI:10.1101/gad.262758.115
Reference
  Authors
Shirihai OS, Song M, Dorn GW 2nd
  Title
How mitochondrial dynamism orchestrates mitophagy.
  Journal
Circ Res 116:1835-49 (2015)
DOI:10.1161/CIRCRESAHA.116.306374
Reference
  Authors
Hamacher-Brady A, Brady NR
  Title
Mitophagy programs: mechanisms and physiological implications of mitochondrial targeting by autophagy.
  Journal
Cell Mol Life Sci 73:775-95 (2016)
DOI:10.1007/s00018-015-2087-8
Reference
  Authors
Yamano K, Matsuda N, Tanaka K
  Title
The ubiquitin signal and autophagy: an orchestrated dance leading to mitochondrial degradation.
  Journal
EMBO Rep 17:300-16 (2016)
DOI:10.15252/embr.201541486
Reference
  Authors
Yamaguchi O, Murakawa T, Nishida K, Otsu K
  Title
Receptor-mediated mitophagy.
  Journal
J Mol Cell Cardiol 95:50-6 (2016)
DOI:10.1016/j.yjmcc.2016.03.010
Reference
  Authors
Roberts RF, Tang MY, Fon EA, Durcan TM
  Title
Defending the mitochondria: The pathways of mitophagy and mitochondrial-derived vesicles.
  Journal
Int J Biochem Cell Biol 79:427-436 (2016)
DOI:10.1016/j.biocel.2016.07.020
Reference
  Authors
Arena G, Valente EM
  Title
PINK1 in the limelight: multiple functions of an eclectic protein in human health and disease.
  Journal
J Pathol 241:251-263 (2017)
DOI:10.1002/path.4815
Related
pathway
amil04140  Autophagy - animal
KO pathway
ko04137   
LinkDB

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