KEGG   PATHWAY: anl00020
Entry
anl00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Anoxybacillus sp. B7M1
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
anl00020  Citrate cycle (TCA cycle)
anl00020

Module
anl_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:anl00020]
anl_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:anl00020]
anl_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:anl00020]
anl_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:anl00020]
anl_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:anl00020]
Other DBs
GO: 0006099
Organism
Anoxybacillus sp. B7M1 [GN:anl]
Gene
GFC29_2018  citZ; citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
GFC29_3354  mmgD; 2-methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
GFC29_552  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
GFC29_2017  icd; isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
GFC29_942  sucA; oxoglutarate dehydrogenase (succinyl-transferring), E1 component [KO:K00164] [EC:1.2.4.2]
GFC29_941  sucB; dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
GFC29_17  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GFC29_1192  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GFC29_1636  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GFC29_240  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GFC29_473  acceptor oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
GFC29_474  acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family protein [KO:K00175] [EC:1.2.7.3 1.2.7.11]
GFC29_379  sucD; succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
GFC29_378  sucC; succinate-CoA ligase, beta subunit [KO:K01903] [EC:6.2.1.5]
GFC29_1960  sdhA; succinate dehydrogenase/fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
GFC29_1959  succinate dehydrogenase and fumarate reductase iron-sulfur family protein [KO:K00240] [EC:1.3.5.1]
GFC29_1961  sdhC; succinate dehydrogenase cytochrome b558 subunit [KO:K00241]
GFC29_3323  hydrolyase, tartrate alpha subunit/fumarate, Fe-S type domain protein [KO:K01676] [EC:4.2.1.2]
GFC29_25  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
GFC29_2016  mdh; malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
GFC29_64  mqo; malate dehydrogenase [KO:K00116] [EC:1.1.5.4]
GFC29_261  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
GFC29_2118  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
GFC29_237  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
GFC29_238  pdhB; pyruvate dehydrogenase E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
GFC29_16  2-oxoacid dehydrogenases acyltransferase family protein [KO:K00627] [EC:2.3.1.12]
GFC29_3197  e3 binding domain protein [KO:K00627] [EC:2.3.1.12]
GFC29_239  pdhC; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
anl00010  Glycolysis / Gluconeogenesis
anl00053  Ascorbate and aldarate metabolism
anl00061  Fatty acid biosynthesis
anl00071  Fatty acid degradation
anl00190  Oxidative phosphorylation
anl00220  Arginine biosynthesis
anl00250  Alanine, aspartate and glutamate metabolism
anl00280  Valine, leucine and isoleucine degradation
anl00350  Tyrosine metabolism
anl00470  D-Amino acid metabolism
anl00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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