KEGG   PATHWAY: anm00020
Entry
anm00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Anoxybacillus sp. B2M1
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
anm00020  Citrate cycle (TCA cycle)
anm00020

Module
anm_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:anm00020]
anm_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:anm00020]
anm_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:anm00020]
anm_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:anm00020]
anm_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:anm00020]
Other DBs
GO: 0006099
Organism
Anoxybacillus sp. B2M1 [GN:anm]
Gene
GFC28_2080  mmgD; 2-methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
GFC28_3416  citZ; citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
GFC28_1075  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
GFC28_3417  icd; isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
GFC28_684  sucA; oxoglutarate dehydrogenase (succinyl-transferring), E1 component [KO:K00164] [EC:1.2.4.2]
GFC28_685  sucB; dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
GFC28_1611  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GFC28_432  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GFC28_1387  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GFC28_3797  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GFC28_1154  acceptor oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
GFC28_1153  acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family protein [KO:K00175] [EC:1.2.7.3 1.2.7.11]
GFC28_1248  sucD; succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
GFC28_1249  sucC; succinate-CoA ligase, beta subunit [KO:K01903] [EC:6.2.1.5]
GFC28_3474  sdhA; succinate dehydrogenase/fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
GFC28_3475  succinate dehydrogenase and fumarate reductase iron-sulfur family protein [KO:K00240] [EC:1.3.5.1]
GFC28_3473  sdhC; succinate dehydrogenase cytochrome b558 subunit [KO:K00241]
GFC28_2111  hydrolyase, tartrate alpha subunit/fumarate, Fe-S type domain protein [KO:K01676] [EC:4.2.1.2]
GFC28_1603  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
GFC28_3418  mdh; malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
GFC28_1564  mqo; malate dehydrogenase [KO:K00116] [EC:1.1.5.4]
GFC28_1366  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
GFC28_3316  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
GFC28_1390  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
GFC28_1389  pdhB; pyruvate dehydrogenase E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
GFC28_2239  e3 binding domain protein [KO:K00627] [EC:2.3.1.12]
GFC28_1612  2-oxoacid dehydrogenases acyltransferase family protein [KO:K00627] [EC:2.3.1.12]
GFC28_1388  pdhC; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
anm00010  Glycolysis / Gluconeogenesis
anm00053  Ascorbate and aldarate metabolism
anm00061  Fatty acid biosynthesis
anm00071  Fatty acid degradation
anm00190  Oxidative phosphorylation
anm00220  Arginine biosynthesis
anm00250  Alanine, aspartate and glutamate metabolism
anm00280  Valine, leucine and isoleucine degradation
anm00350  Tyrosine metabolism
anm00470  D-Amino acid metabolism
anm00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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