KEGG   PATHWAY: anp00020
Entry
anp00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Antarcticibacterium arcticum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
anp00020  Citrate cycle (TCA cycle)
anp00020

Module
anp_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:anp00020]
anp_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:anp00020]
anp_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:anp00020]
anp_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:anp00020]
anp_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:anp00020]
Other DBs
GO: 0006099
Organism
Antarcticibacterium arcticum [GN:anp]
Gene
FK178_14705  citrate synthase [KO:K01647] [EC:2.3.3.1]
FK178_00680  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
FK178_10505  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
FK178_00865  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
FK178_13785  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
FK178_07755  2-oxo acid dehydrogenase subunit E2 [KO:K00658] [EC:2.3.1.61]
FK178_13790  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
FK178_03215  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FK178_06900  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FK178_05425  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FK178_03680  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
FK178_01220  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
FK178_11615  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
FK178_11610  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
FK178_11620  succinate dehydrogenase cytochrome b subunit [KO:K00241]
FK178_03510  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
FK178_14850  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
FK178_13920  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
FK178_14325  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
FK178_09510  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
FK178_14330  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
anp00010  Glycolysis / Gluconeogenesis
anp00053  Ascorbate and aldarate metabolism
anp00061  Fatty acid biosynthesis
anp00071  Fatty acid degradation
anp00190  Oxidative phosphorylation
anp00220  Arginine biosynthesis
anp00250  Alanine, aspartate and glutamate metabolism
anp00280  Valine, leucine and isoleucine degradation
anp00350  Tyrosine metabolism
anp00470  D-Amino acid metabolism
anp00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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