KEGG   PATHWAY: anu00020
Entry
anu00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Arvicanthis niloticus (African grass rat)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
anu00020  Citrate cycle (TCA cycle)
anu00020

Module
anu_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:anu00020]
anu_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:anu00020]
anu_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:anu00020]
anu_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:anu00020]
anu_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:anu00020]
Other DBs
GO: 0006099
Organism
Arvicanthis niloticus (African grass rat) [GN:anu]
Gene
117696626  citrate synthase, mitochondrial-like [KO:K01647] [EC:2.3.3.1]
117696174  Cs; citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
117710100  Acly; ATP-citrate synthase isoform X1 [KO:K01648] [EC:2.3.3.8]
117718765  Aco2; aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
117708990  Aco1; cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
117701822  cytoplasmic aconitate hydratase-like [KO:K01681] [EC:4.2.1.3]
117705021  Idh2; isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
117705387  Idh1; isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
117699243  Idh3a; isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
117717756  probable isocitrate dehydrogenase [NAD] gamma 2, mitochondrial [KO:K00030] [EC:1.1.1.41]
117694374  Idh3g; isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
117702716  Idh3b; isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
117705328  Ogdhl; 2-oxoglutarate dehydrogenase-like, mitochondrial [KO:K00164] [EC:1.2.4.2]
117712455  Ogdh; 2-oxoglutarate dehydrogenase, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
117697163  Dlst; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
117716972  Dld; dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
117715604  Suclg1; succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
117715483  Suclg2; succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
117705800  Sucla2; succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial isoform X1 [KO:K01900] [EC:6.2.1.4 6.2.1.5]
117723771  Sdha; succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
117709445  Sdhb; succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
117721910  Sdhc; succinate dehydrogenase cytochrome b560 subunit, mitochondrial [KO:K00236]
117699282  Sdhd; succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial [KO:K00237]
117721822  Fh; fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
117712519  Mdh1; malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
117697908  Mdh2; malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
117704743  Pc; pyruvate carboxylase, mitochondrial [KO:K01958] [EC:6.4.1.1]
117706152  Pck2; phosphoenolpyruvate carboxykinase [GTP], mitochondrial [KO:K01596] [EC:4.1.1.32]
117703545  Pck1; phosphoenolpyruvate carboxykinase, cytosolic [GTP] [KO:K01596] [EC:4.1.1.32]
117707610  Pdha2; pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial [KO:K00161] [EC:1.2.4.1]
117700952  LOW QUALITY PROTEIN: pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
117701853  LOW QUALITY PROTEIN: pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
117694157  Pdha1; pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial isoform X1 [KO:K00161] [EC:1.2.4.1]
117705012  Pdhb; pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
117699342  Dlat; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
anu00010  Glycolysis / Gluconeogenesis
anu00053  Ascorbate and aldarate metabolism
anu00061  Fatty acid biosynthesis
anu00062  Fatty acid elongation
anu00071  Fatty acid degradation
anu00190  Oxidative phosphorylation
anu00220  Arginine biosynthesis
anu00250  Alanine, aspartate and glutamate metabolism
anu00280  Valine, leucine and isoleucine degradation
anu00350  Tyrosine metabolism
anu00470  D-Amino acid metabolism
anu00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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