KEGG   PATHWAY: aoh00020
Entry
aoh00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Anaplasma ovis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
aoh00020  Citrate cycle (TCA cycle)
aoh00020

Module
aoh_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:aoh00020]
aoh_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:aoh00020]
aoh_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:aoh00020]
aoh_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:aoh00020]
Other DBs
GO: 0006099
Organism
Anaplasma ovis [GN:aoh]
Gene
AOV_05120  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
AOV_03810  acnA; aconitate hydratase 1 [KO:K27802] [EC:4.2.1.3 4.2.1.99]
AOV_04255  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
AOV_01330  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
AOV_04070  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
AOV_02845  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
AOV_00610  gor; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
AOV_00660  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
AOV_00665  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
AOV_00445  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
AOV_00450  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
AOV_00900  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
AOV_00905  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
AOV_03460  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
AOV_01965  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AOV_00185  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
AOV_04450  pdhB; pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
AOV_05105  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
aoh00010  Glycolysis / Gluconeogenesis
aoh00061  Fatty acid biosynthesis
aoh00190  Oxidative phosphorylation
aoh00220  Arginine biosynthesis
aoh00250  Alanine, aspartate and glutamate metabolism
aoh00280  Valine, leucine and isoleucine degradation
aoh00470  D-Amino acid metabolism
aoh00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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