KEGG   PATHWAY: aou00020
Entry
aou00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Actinoplanes oblitus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
aou00020  Citrate cycle (TCA cycle)
aou00020

Module
aou_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:aou00020]
aou_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:aou00020]
aou_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:aou00020]
aou_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:aou00020]
aou_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:aou00020]
Other DBs
GO: 0006099
Organism
Actinoplanes oblitus [GN:aou]
Gene
ACTOB_000339  citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
ACTOB_002540  citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
ACTOB_002541  citrate/2-methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
ACTOB_005849  citrate synthase [KO:K01647] [EC:2.3.3.1]
ACTOB_001858  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
ACTOB_000738  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
ACTOB_007814  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
ACTOB_001588  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
ACTOB_002059  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
ACTOB_008189  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
ACTOB_008190  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
ACTOB_000733  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
ACTOB_000732  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
ACTOB_007988  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
ACTOB_001680  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
ACTOB_007989  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
ACTOB_001679  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
ACTOB_001681  succinate dehydrogenase cytochrome b subunit [KO:K00241]
ACTOB_008358  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
ACTOB_008355  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
ACTOB_002384  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
ACTOB_008045  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
ACTOB_001492  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
ACTOB_002659  pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
ACTOB_001587  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
ACTOB_004812  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
aou00010  Glycolysis / Gluconeogenesis
aou00053  Ascorbate and aldarate metabolism
aou00061  Fatty acid biosynthesis
aou00071  Fatty acid degradation
aou00190  Oxidative phosphorylation
aou00220  Arginine biosynthesis
aou00250  Alanine, aspartate and glutamate metabolism
aou00280  Valine, leucine and isoleucine degradation
aou00350  Tyrosine metabolism
aou00470  D-Amino acid metabolism
aou00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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