KEGG   PATHWAY: apan00020
Entry
apan00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Andrographis paniculata
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
apan00020  Citrate cycle (TCA cycle)
apan00020

Module
apan_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:apan00020]
apan_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:apan00020]
apan_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:apan00020]
Other DBs
GO: 0006099
Organism
Andrographis paniculata [GN:apan]
Gene
127247500  citrate synthase, glyoxysomal-like [KO:K01647] [EC:2.3.3.1]
127261857  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
127266447  ATP-citrate synthase beta chain protein 2 [KO:K01648] [EC:2.3.3.8]
127249542  uncharacterized protein LOC127249542 isoform X1 [KO:K01648] [EC:2.3.3.8]
127260898  ATP-citrate synthase alpha chain protein 2 [KO:K01648] [EC:2.3.3.8]
127261776  ATP-citrate synthase alpha chain protein 1 [KO:K01648] [EC:2.3.3.8]
127248031  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
127265905  aconitate hydratase, cytoplasmic-like [KO:K01681] [EC:4.2.1.3]
127258091  isocitrate dehydrogenase [NADP]-like [KO:K00031] [EC:1.1.1.42]
127242154  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
127253427  isocitrate dehydrogenase [NADP]-like [KO:K00031] [EC:1.1.1.42]
127266378  isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
127261211  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial [KO:K00030] [EC:1.1.1.41]
127252200  3-isopropylmalate dehydrogenase, chloroplastic-like [KO:K00030] [EC:1.1.1.41]
127253903  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
127246736  uncharacterized protein LOC127246736 [KO:K00164] [EC:1.2.4.2]
127263692  uncharacterized protein LOC127263692 [KO:K00164] [EC:1.2.4.2]
127251868  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
127264968  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like isoform X1 [KO:K00658] [EC:2.3.1.61]
127250125  dihydrolipoyl dehydrogenase 1, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
127250682  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
127261244  dihydrolipoyl dehydrogenase 2, chloroplastic [KO:K00382] [EC:1.8.1.4]
127245095  succinate--CoA ligase [ADP-forming] subunit alpha-2, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
127241514  succinate--CoA ligase [ADP-forming] subunit alpha-2, mitochondrial-like [KO:K01899] [EC:6.2.1.4 6.2.1.5]
127258772  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
127242906  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
127258235  succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
127240313  succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [KO:K00234] [EC:1.3.5.1]
127260282  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
127241930  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial [KO:K00235] [EC:1.3.5.1]
127242097  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
127258805  fumarate hydratase 1, mitochondrial isoform X1 [KO:K01679] [EC:4.2.1.2]
127256399  malate dehydrogenase-like [KO:K00025] [EC:1.1.1.37]
127249400  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
127249931  malate dehydrogenase-like [KO:K00025] [EC:1.1.1.37]
127250221  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
127266056  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
127257792  malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
127247594  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
127240918  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
127262623  malate dehydrogenase, glyoxysomal isoform X1 [KO:K00026] [EC:1.1.1.37]
127252787  malate dehydrogenase, chloroplastic-like isoform X1 [KO:K00026] [EC:1.1.1.37]
127248908  phosphoenolpyruvate carboxykinase (ATP) 1 [KO:K01610] [EC:4.1.1.49]
127241944  phosphoenolpyruvate carboxykinase (ATP) 1 isoform X1 [KO:K01610] [EC:4.1.1.49]
127265072  phosphoenolpyruvate carboxykinase (ATP) 1-like isoform X1 [KO:K01610] [EC:4.1.1.49]
127245668  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
127252854  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic [KO:K00161] [EC:1.2.4.1]
127263672  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [KO:K00161] [EC:1.2.4.1]
127241839  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic-like [KO:K00161] [EC:1.2.4.1]
127266643  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial-like isoform X1 [KO:K00162] [EC:1.2.4.1]
127245307  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
127249492  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [KO:K00162] [EC:1.2.4.1]
127263137  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial-like isoform X1 [KO:K00162] [EC:1.2.4.1]
127243594  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial [KO:K00162] [EC:1.2.4.1]
127254364  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial [KO:K00162] [EC:1.2.4.1]
127254495  pyruvate dehydrogenase E1 component subunit beta-like [KO:K00162] [EC:1.2.4.1]
127245408  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
127256975  dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
127253992  dihydrolipoyllysine-residue acetyltransferase component 3 of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
127243808  dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
apan00010  Glycolysis / Gluconeogenesis
apan00053  Ascorbate and aldarate metabolism
apan00061  Fatty acid biosynthesis
apan00062  Fatty acid elongation
apan00071  Fatty acid degradation
apan00190  Oxidative phosphorylation
apan00220  Arginine biosynthesis
apan00250  Alanine, aspartate and glutamate metabolism
apan00280  Valine, leucine and isoleucine degradation
apan00350  Tyrosine metabolism
apan00470  D-Amino acid metabolism
apan00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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