KEGG   PATHWAY: apau00020
Entry
apau00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Anaeromyxobacter paludicola
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
apau00020  Citrate cycle (TCA cycle)
apau00020

Module
apau_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:apau00020]
apau_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:apau00020]
Other DBs
GO: 0006099
Organism
Anaeromyxobacter paludicola [GN:apau]
Gene
AMPC_35100  gltA; type I citrate synthase [KO:K01647] [EC:2.3.3.1]
AMPC_35130  acnA; aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
AMPC_00870  acnB; aconitate hydratase B [KO:K01682] [EC:4.2.1.3 4.2.1.99]
AMPC_04190  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
AMPC_08460  hypothetical protein [KO:K00031] [EC:1.1.1.42]
AMPC_36150  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
AMPC_36160  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
AMPC_08190  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
AMPC_05770  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
AMPC_05790  korA; 2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
AMPC_38040  pyruvate ferredoxin oxidoreductase [KO:K00174] [EC:1.2.7.3 1.2.7.11]
AMPC_05760  2-oxoglutarate synthase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
AMPC_05800  korB; 2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
AMPC_38050  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
AMPC_05750  2-oxoglutarate ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
AMPC_05780  4Fe-4S ferredoxin [KO:K00176] [EC:1.2.7.3]
AMPC_08430  sucD; succinate--CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
AMPC_08440  sucC; succinate--CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
AMPC_11760  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
AMPC_12970  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
AMPC_12980  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
AMPC_04490  fumB; fumarate hydratase class I [KO:K01676] [EC:4.2.1.2]
AMPC_04200  mdh_1; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AMPC_08450  mdh_2; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AMPC_18290  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
AMPC_25940  3-methylcrotonyl-CoA carboxylase subunit alpha [KO:K01959] [EC:6.4.1.1]
AMPC_35040  pckG; phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
AMPC_00900  pdhA; pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
AMPC_08200  hypothetical protein [KO:K00161] [EC:1.2.4.1]
AMPC_00920  acoB; pyruvate dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
AMPC_08220  bkdAb; 2-oxoisovalerate dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
AMPC_00930  acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
AMPC_26330  nifJ; pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
apau00010  Glycolysis / Gluconeogenesis
apau00053  Ascorbate and aldarate metabolism
apau00061  Fatty acid biosynthesis
apau00071  Fatty acid degradation
apau00190  Oxidative phosphorylation
apau00220  Arginine biosynthesis
apau00250  Alanine, aspartate and glutamate metabolism
apau00280  Valine, leucine and isoleucine degradation
apau00350  Tyrosine metabolism
apau00470  D-Amino acid metabolism
apau00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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