KEGG   PATHWAY: aplc00020
Entry
aplc00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Acanthaster planci (crown-of-thorns starfish)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
aplc00020  Citrate cycle (TCA cycle)
aplc00020

Module
aplc_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:aplc00020]
aplc_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:aplc00020]
aplc_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:aplc00020]
aplc_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:aplc00020]
aplc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:aplc00020]
Other DBs
GO: 0006099
Organism
Acanthaster planci (crown-of-thorns starfish) [GN:aplc]
Gene
110984224  citrate synthase, mitochondrial-like [KO:K01647] [EC:2.3.3.1]
110982591  ATP-citrate synthase-like isoform X1 [KO:K01648] [EC:2.3.3.8]
110987051  ATP-citrate synthase-like [KO:K01648] [EC:2.3.3.8]
110984525  cytoplasmic aconitate hydratase-like isoform X1 [KO:K01681] [EC:4.2.1.3]
110986141  LOW QUALITY PROTEIN: probable aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
110982381  isocitrate dehydrogenase [NADP] cytoplasmic-like isoform X1 [KO:K00031] [EC:1.1.1.42]
110978102  isocitrate dehydrogenase [NADP], mitochondrial-like [KO:K00031] [EC:1.1.1.42]
110988741  isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
110973822  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
110982138  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
110986840  2-oxoglutarate dehydrogenase, mitochondrial-like isoform X1 [KO:K00164] [EC:1.2.4.2]
110975163  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
110983680  dihydrolipoyl dehydrogenase, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
110987889  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial-like [KO:K01899] [EC:6.2.1.4 6.2.1.5]
110983617  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
110974097  succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
110986692  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
110979126  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
110982044  succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like [KO:K00236]
110990396  succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial-like [KO:K00237]
110984266  uncharacterized protein LOC110984266 [KO:K01676] [EC:4.2.1.2]
110986325  fumarate hydratase, mitochondrial-like isoform X1 [KO:K01679] [EC:4.2.1.2]
110976738  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
110980666  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
110980522  pyruvate carboxylase, mitochondrial-like [KO:K01958] [EC:6.4.1.1]
110980089  phosphoenolpyruvate carboxykinase, cytosolic [GTP]-like isoform X1 [KO:K01596] [EC:4.1.1.32]
110980090  phosphoenolpyruvate carboxykinase, cytosolic [GTP]-like [KO:K01596] [EC:4.1.1.32]
110974400  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like isoform X1 [KO:K00161] [EC:1.2.4.1]
110986929  pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
110975296  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial-like isoform X1 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
aplc00010  Glycolysis / Gluconeogenesis
aplc00053  Ascorbate and aldarate metabolism
aplc00061  Fatty acid biosynthesis
aplc00062  Fatty acid elongation
aplc00071  Fatty acid degradation
aplc00190  Oxidative phosphorylation
aplc00220  Arginine biosynthesis
aplc00250  Alanine, aspartate and glutamate metabolism
aplc00280  Valine, leucine and isoleucine degradation
aplc00350  Tyrosine metabolism
aplc00470  D-Amino acid metabolism
aplc00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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