KEGG   PATHWAY: apo00020
Entry
apo00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Archaeoglobus profundus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
apo00020  Citrate cycle (TCA cycle)
apo00020

Module
apo_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:apo00020]
Other DBs
GO: 0006099
Organism
Archaeoglobus profundus [GN:apo]
Gene
Arcpr_1122  2-methylcitrate synthase/citrate synthase II [KO:K01659] [EC:2.3.3.5]
Arcpr_0248  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
Arcpr_1843  succinate dehydrogenase or fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Arcpr_1842  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
Arcpr_1841  hypothetical protein [KO:K00241]
Arcpr_1840  hypothetical protein [KO:K00242]
Arcpr_0531  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit [KO:K01677] [EC:4.2.1.2]
Arcpr_0532  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit [KO:K01678] [EC:4.2.1.2]
Arcpr_0622  Lactate/malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Arcpr_0037  acetyl-CoA carboxylase, biotin carboxylase [KO:K01959] [EC:6.4.1.1]
Arcpr_0005  oxaloacetate decarboxylase alpha subunit [KO:K01960] [EC:6.4.1.1]
Arcpr_1059  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00169] [EC:1.2.7.1]
Arcpr_0763  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00169] [EC:1.2.7.1]
Arcpr_0764  thiamine pyrophosphate protein domain protein TPP-binding protein [KO:K00170] [EC:1.2.7.1]
Arcpr_1060  thiamine pyrophosphate protein domain protein TPP-binding protein [KO:K00170] [EC:1.2.7.1]
Arcpr_1057  pyruvate/ketoisovalerate oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
Arcpr_0761  pyruvate/ketoisovalerate oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
Arcpr_0762  pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Arcpr_1058  pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
apo00010  Glycolysis / Gluconeogenesis
apo00071  Fatty acid degradation
apo00190  Oxidative phosphorylation
apo00220  Arginine biosynthesis
apo00250  Alanine, aspartate and glutamate metabolism
apo00280  Valine, leucine and isoleucine degradation
apo00350  Tyrosine metabolism
apo00470  D-Amino acid metabolism
apo00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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