KEGG   PATHWAY: aprt00020
Entry
aprt00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Amycolatopsis sp. FBCC-B4732
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
aprt00020  Citrate cycle (TCA cycle)
aprt00020

Module
aprt_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:aprt00020]
aprt_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:aprt00020]
aprt_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:aprt00020]
aprt_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:aprt00020]
aprt_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:aprt00020]
Other DBs
GO: 0006099
Organism
Amycolatopsis sp. FBCC-B4732 [GN:aprt]
Gene
MUY14_41520  citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
MUY14_41635  citrate synthase [KO:K01647] [EC:2.3.3.1]
MUY14_13330  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
MUY14_12840  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
MUY14_32640  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
MUY14_44555  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
MUY14_01880  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MUY14_25605  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MUY14_33875  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
MUY14_33880  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
MUY14_32805  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
MUY14_14185  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
MUY14_32810  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
MUY14_14180  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
MUY14_32550  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MUY14_19435  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MUY14_24680  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MUY14_32555  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
MUY14_19430  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
MUY14_24675  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
MUY14_32540  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
MUY14_19440  succinate dehydrogenase cytochrome b subunit [KO:K00241]
MUY14_32545  succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
MUY14_23565  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
MUY14_43960  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
MUY14_13800  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MUY14_27655  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
MUY14_37305  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
MUY14_25850  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
MUY14_26580  pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
MUY14_25610  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
MUY14_08240  hypothetical protein [KO:K00169] [EC:1.2.7.1]
MUY14_08245  thiamine pyrophosphate-dependent enzyme [KO:K00170] [EC:1.2.7.1]
MUY14_08235  2-oxoacid:acceptor oxidoreductase family protein [KO:K00172] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
aprt00010  Glycolysis / Gluconeogenesis
aprt00053  Ascorbate and aldarate metabolism
aprt00061  Fatty acid biosynthesis
aprt00071  Fatty acid degradation
aprt00190  Oxidative phosphorylation
aprt00220  Arginine biosynthesis
aprt00250  Alanine, aspartate and glutamate metabolism
aprt00280  Valine, leucine and isoleucine degradation
aprt00350  Tyrosine metabolism
aprt00470  D-Amino acid metabolism
aprt00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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