KEGG   PATHWAY: aqb00020
Entry
aqb00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Aquimarina sp. BL5
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
aqb00020  Citrate cycle (TCA cycle)
aqb00020

Module
aqb_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:aqb00020]
aqb_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:aqb00020]
aqb_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:aqb00020]
aqb_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:aqb00020]
aqb_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:aqb00020]
Other DBs
GO: 0006099
Organism
Aquimarina sp. BL5 [GN:aqb]
Gene
D1818_20020  citrate synthase [KO:K01647] [EC:2.3.3.1]
D1818_22310  aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
D1818_22305  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
D1818_12475  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
D1818_04610  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
D1818_12130  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
D1818_12125  2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
D1818_21620  2-oxo acid dehydrogenase subunit E2 [KO:K00658] [EC:2.3.1.61]
D1818_18230  2-oxo acid dehydrogenase subunit E2 [KO:K00658] [EC:2.3.1.61]
D1818_04205  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
D1818_01435  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
D1818_03070  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
D1818_21990  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
D1818_12940  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
D1818_12935  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
D1818_12945  succinate dehydrogenase [KO:K00241]
D1818_04030  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
D1818_08855  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
D1818_20920  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
D1818_06195  accC; acetyl-CoA carboxylase biotin carboxylase subunit [KO:K01959] [EC:6.4.1.1]
D1818_16240  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
D1818_19005  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
D1818_10715  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
D1818_19010  biotin/lipoyl-binding protein [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
aqb00010  Glycolysis / Gluconeogenesis
aqb00053  Ascorbate and aldarate metabolism
aqb00061  Fatty acid biosynthesis
aqb00071  Fatty acid degradation
aqb00190  Oxidative phosphorylation
aqb00220  Arginine biosynthesis
aqb00250  Alanine, aspartate and glutamate metabolism
aqb00280  Valine, leucine and isoleucine degradation
aqb00350  Tyrosine metabolism
aqb00470  D-Amino acid metabolism
aqb00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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