KEGG   PATHWAY: ard00020
Entry
ard00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Actinomyces radicidentis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ard00020  Citrate cycle (TCA cycle)
ard00020

Module
ard_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ard00020]
ard_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ard00020]
Other DBs
GO: 0006099
Organism
Actinomyces radicidentis [GN:ard]
Gene
AXF14_11445  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
AXF14_01235  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
AXF14_01190  kgd; alpha-ketoglutarate decarboxylase [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
AXF14_10010  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AXF14_00930  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
AXF14_00935  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
AXF14_02230  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
AXF14_07405  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
AXF14_02235  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
AXF14_07410  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
AXF14_02225  succinate dehydrogenase [KO:K00241]
AXF14_07400  cytochrome B [KO:K00241]
AXF14_00560  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
AXF14_00890  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AXF14_06195  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
AXF14_09790  alpha-ketoglutarate dehydrogenase [KO:K00163] [EC:1.2.4.1]
AXF14_10005  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ard00010  Glycolysis / Gluconeogenesis
ard00053  Ascorbate and aldarate metabolism
ard00061  Fatty acid biosynthesis
ard00071  Fatty acid degradation
ard00190  Oxidative phosphorylation
ard00220  Arginine biosynthesis
ard00250  Alanine, aspartate and glutamate metabolism
ard00280  Valine, leucine and isoleucine degradation
ard00350  Tyrosine metabolism
ard00470  D-Amino acid metabolism
ard00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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