KEGG   PATHWAY: arep00020
Entry
arep00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Actinomyces respiraculi
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
arep00020  Citrate cycle (TCA cycle)
arep00020

Module
arep_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:arep00020]
arep_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:arep00020]
arep_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:arep00020]
arep_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:arep00020]
Other DBs
GO: 0006099
Organism
Actinomyces respiraculi [GN:arep]
Gene
ID810_01770  citrate synthase [KO:K01647] [EC:2.3.3.1]
ID810_06835  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
ID810_02710  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
ID810_02735  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
ID810_05725  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
ID810_03210  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
ID810_03205  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
ID810_01780  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
ID810_09355  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
ID810_01775  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
ID810_09350  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
ID810_01785  succinate dehydrogenase cytochrome b subunit [KO:K00241]
ID810_09360  succinate dehydrogenase cytochrome b subunit [KO:K00241]
ID810_03485  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
ID810_03240  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
ID810_08340  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
ID810_10760  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
ID810_05600  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
ID810_05720  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
arep00010  Glycolysis / Gluconeogenesis
arep00053  Ascorbate and aldarate metabolism
arep00061  Fatty acid biosynthesis
arep00071  Fatty acid degradation
arep00190  Oxidative phosphorylation
arep00220  Arginine biosynthesis
arep00250  Alanine, aspartate and glutamate metabolism
arep00280  Valine, leucine and isoleucine degradation
arep00350  Tyrosine metabolism
arep00470  D-Amino acid metabolism
arep00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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