KEGG   PATHWAY: arm00020
Entry
arm00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Arthrobacter sp. PAMC 25486
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
arm00020  Citrate cycle (TCA cycle)
arm00020

Module
arm_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:arm00020]
arm_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:arm00020]
arm_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:arm00020]
arm_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:arm00020]
arm_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:arm00020]
Other DBs
GO: 0006099
Organism
Arthrobacter sp. PAMC 25486 [GN:arm]
Gene
ART_1897  putative citrate synthase [KO:K01647] [EC:2.3.3.1]
ART_0647  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
ART_0251  aconitase [KO:K01681] [EC:4.2.1.3]
ART_3866  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
ART_1540  2-oxoglutarate decarboxylase [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
ART_0215  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
ART_3749  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
ART_3748  succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
ART_3835  succinyl-CoA:coenzyme A transferase [KO:K18118] [EC:2.8.3.18]
ART_3898  succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
ART_0448  succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
ART_0344  hypothetical protein [KO:K00239] [EC:1.3.5.1]
ART_3897  succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
ART_0343  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
ART_3900  succinate dehydrogenase cytochrome, b-556 subunit [KO:K00241]
ART_0345  succinate dehydrogenase, cytochrome b subunit [KO:K00241]
ART_3899  succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
ART_3953  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
ART_1958  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
ART_1377  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
ART_0092  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
ART_3275  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
ART_1148  pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
ART_0340  pyruvate dehydrogenase [KO:K00161] [EC:1.2.4.1]
ART_0339  pyruvate dehydrogenase [KO:K00162] [EC:1.2.4.1]
ART_0338  dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
ART_0214  2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
arm00010  Glycolysis / Gluconeogenesis
arm00053  Ascorbate and aldarate metabolism
arm00061  Fatty acid biosynthesis
arm00071  Fatty acid degradation
arm00190  Oxidative phosphorylation
arm00220  Arginine biosynthesis
arm00250  Alanine, aspartate and glutamate metabolism
arm00280  Valine, leucine and isoleucine degradation
arm00350  Tyrosine metabolism
arm00470  D-Amino acid metabolism
arm00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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