KEGG   PATHWAY: aroa00020
Entry
aroa00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Athalia rosae (coleseed sawfly)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
aroa00020  Citrate cycle (TCA cycle)
aroa00020

Module
aroa_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:aroa00020]
aroa_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:aroa00020]
aroa_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:aroa00020]
aroa_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:aroa00020]
aroa_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:aroa00020]
Other DBs
GO: 0006099
Organism
Athalia rosae (coleseed sawfly) [GN:aroa]
Gene
105684670  probable citrate synthase 2, mitochondrial [KO:K01647] [EC:2.3.3.1]
105687037  probable citrate synthase 2, mitochondrial isoform X1 [KO:K01647] [EC:2.3.3.1]
105683588  ATP-citrate synthase [KO:K01648] [EC:2.3.3.8]
105693566  probable aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
105690815  cytoplasmic aconitate hydratase-like [KO:K01681] [EC:4.2.1.3]
105691865  isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
105693524  probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
105685807  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial [KO:K00030] [EC:1.1.1.41]
105692125  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial [KO:K00030] [EC:1.1.1.41]
105688608  2-oxoglutarate dehydrogenase complex component E1 isoform X1 [KO:K00164] [EC:1.2.4.2]
125501839  2-oxoglutarate dehydrogenase complex component E1-like [KO:K00164] [EC:1.2.4.2]
105693952  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial isoform X1 [KO:K00658] [EC:2.3.1.61]
105691624  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
105687130  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
105687388  succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
105692729  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
105687704  succinate dehydrogenase [ubiquinone] iron-sulfur subunit-like [KO:K00235] [EC:1.3.5.1]
105689859  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
105692793  succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like [KO:K00236]
105692441  succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial [KO:K00237]
105686383  fumarate hydratase, mitochondrial-like isoform X1 [KO:K01679] [EC:4.2.1.2]
105684657  malate dehydrogenase, cytoplasmic isoform X1 [KO:K00025] [EC:1.1.1.37]
105689493  malate dehydrogenase, mitochondrial-like isoform X1 [KO:K00026] [EC:1.1.1.37]
105692302  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
105686618  pyruvate carboxylase, mitochondrial isoform X1 [KO:K01958] [EC:6.4.1.1]
105692345  phosphoenolpyruvate carboxykinase [GTP]-like [KO:K01596] [EC:4.1.1.32]
105687699  probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial isoform X2 [KO:K00161] [EC:1.2.4.1]
105688237  pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
105687591  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial isoform X2 [KO:K00627] [EC:2.3.1.12]
105692911  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex-like isoform X1 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
aroa00010  Glycolysis / Gluconeogenesis
aroa00053  Ascorbate and aldarate metabolism
aroa00061  Fatty acid biosynthesis
aroa00062  Fatty acid elongation
aroa00071  Fatty acid degradation
aroa00190  Oxidative phosphorylation
aroa00220  Arginine biosynthesis
aroa00250  Alanine, aspartate and glutamate metabolism
aroa00280  Valine, leucine and isoleucine degradation
aroa00350  Tyrosine metabolism
aroa00470  D-Amino acid metabolism
aroa00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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