KEGG   PATHWAY: arr00020
Entry
arr00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Arthrobacter sp. Rue61a
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
arr00020  Citrate cycle (TCA cycle)
arr00020

Module
arr_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:arr00020]
arr_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:arr00020]
arr_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:arr00020]
arr_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:arr00020]
arr_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:arr00020]
Other DBs
GO: 0006099
Organism
Arthrobacter sp. Rue61a [GN:arr]
Gene
ARUE_c29480  gltA2; citrate synthase [KO:K01647] [EC:2.3.3.1]
ARUE_c16940  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
ARUE_c11370  icd; isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
ARUE_c27920  kgd; 2-oxoglutarate decarboxylase Kgd [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
ARUE_c16600  bfmBC; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
ARUE_c09990  sucD; succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
ARUE_c09980  sucC; succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
ARUE_c05370  putative FAD-dependent oxidoreductase [KO:K00239] [EC:1.3.5.1]
ARUE_c11810  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
ARUE_c11800  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
ARUE_c11830  sdhC; succinate:quinone oxidoreductase C subunit [KO:K00241]
ARUE_c11820  sdhD; succinate dehydrogenase, membrane subunit [KO:K00242]
ARUE_c12360  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
ARUE_c05390  mdh; malate dehydrogenase Mdh [KO:K00024] [EC:1.1.1.37]
ARUE_c26750  mqo; putative malate:quinone oxidoreductase Mqo [KO:K00116] [EC:1.1.5.4]
ARUE_c15960  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
ARUE_c07830  pckG; phosphoenolpyruvate carboxykinase (GTP) PckG [KO:K01596] [EC:4.1.1.32]
ARUE_c35260  aceE3; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
ARUE_c25880  aceE2; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
ARUE_c20450  aceE1; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
ARUE_c16590  dltA; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
arr00010  Glycolysis / Gluconeogenesis
arr00053  Ascorbate and aldarate metabolism
arr00061  Fatty acid biosynthesis
arr00071  Fatty acid degradation
arr00190  Oxidative phosphorylation
arr00220  Arginine biosynthesis
arr00250  Alanine, aspartate and glutamate metabolism
arr00280  Valine, leucine and isoleucine degradation
arr00350  Tyrosine metabolism
arr00470  D-Amino acid metabolism
arr00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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