KEGG   PATHWAY: arw00020
Entry
arw00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Arthrobacter alpinus A3
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
arw00020  Citrate cycle (TCA cycle)
arw00020

Module
arw_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:arw00020]
arw_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:arw00020]
arw_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:arw00020]
arw_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:arw00020]
arw_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:arw00020]
Other DBs
GO: 0006099
Organism
Arthrobacter alpinus A3 [GN:arw]
Gene
MB46_12500  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
MB46_07880  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
MB46_01700  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
MB46_11200  kgd; alpha-ketoglutarate decarboxylase [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
MB46_08050  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
MB46_01085  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
MB46_01080  succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
MB46_01495  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
MB46_01920  fumarate reductase [KO:K00239] [EC:1.3.5.1]
MB46_01915  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
MB46_01930  succinate dehydrogenase [KO:K00241]
MB46_01925  succinate dehydrogenase [KO:K00242]
MB46_02190  aspA; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
MB46_12740  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MB46_10490  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
MB46_08355  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
MB46_18805  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
MB46_09465  alpha-ketoglutarate dehydrogenase [KO:K00163] [EC:1.2.4.1]
MB46_14775  alpha-ketoglutarate dehydrogenase [KO:K00163] [EC:1.2.4.1]
MB46_14860  hypothetical protein [KO:K00627] [EC:2.3.1.12]
MB46_08055  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
arw00010  Glycolysis / Gluconeogenesis
arw00053  Ascorbate and aldarate metabolism
arw00061  Fatty acid biosynthesis
arw00071  Fatty acid degradation
arw00190  Oxidative phosphorylation
arw00220  Arginine biosynthesis
arw00250  Alanine, aspartate and glutamate metabolism
arw00280  Valine, leucine and isoleucine degradation
arw00350  Tyrosine metabolism
arw00470  D-Amino acid metabolism
arw00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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