KEGG   PATHWAY: asal00020
Entry
asal00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Agrobacterium salinitolerans
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
asal00020  Citrate cycle (TCA cycle)
asal00020

Module
asal_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:asal00020]
asal_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:asal00020]
asal_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:asal00020]
asal_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:asal00020]
asal_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:asal00020]
Other DBs
GO: 0006099
Organism
Agrobacterium salinitolerans [GN:asal]
Gene
CFBP5507_23615  citrate synthase [KO:K01647] [EC:2.3.3.1]
CFBP5507_23620  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
CFBP5507_05370  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
CFBP5507_12220  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
CFBP5507_15350  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
CFBP5507_08260  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
CFBP5507_11945  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
CFBP5507_11940  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
CFBP5507_05495  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CFBP5507_11925  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CFBP5507_11950  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
CFBP5507_11955  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
CFBP5507_00350  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
CFBP5507_11985  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CFBP5507_11975  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CFBP5507_11995  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
CFBP5507_11990  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
CFBP5507_06760  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
CFBP5507_11960  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CFBP5507_02225  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
CFBP5507_12430  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
CFBP5507_13140  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
CFBP5507_05475  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
CFBP5507_05480  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
CFBP5507_05485  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
asal00010  Glycolysis / Gluconeogenesis
asal00053  Ascorbate and aldarate metabolism
asal00061  Fatty acid biosynthesis
asal00071  Fatty acid degradation
asal00190  Oxidative phosphorylation
asal00220  Arginine biosynthesis
asal00250  Alanine, aspartate and glutamate metabolism
asal00280  Valine, leucine and isoleucine degradation
asal00350  Tyrosine metabolism
asal00470  D-Amino acid metabolism
asal00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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