KEGG   PATHWAY: asez00020
Entry
asez00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Aeromicrobium senzhongii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
asez00020  Citrate cycle (TCA cycle)
asez00020

Module
asez_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:asez00020]
asez_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:asez00020]
asez_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:asez00020]
asez_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:asez00020]
asez_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:asez00020]
Other DBs
GO: 0006099
Organism
Aeromicrobium senzhongii [GN:asez]
Gene
H9L21_13030  citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
H9L21_02920  citrate synthase [KO:K01647] [EC:2.3.3.1]
H9L21_08755  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
H9L21_12805  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
H9L21_10605  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
H9L21_05735  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
H9L21_12895  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
H9L21_12890  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
H9L21_06395  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
H9L21_12750  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
H9L21_12745  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
H9L21_12755  succinate dehydrogenase cytochrome b subunit [KO:K00241]
H9L21_03750  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
H9L21_12935  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
H9L21_07770  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
H9L21_05400  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
H9L21_05730  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
asez00010  Glycolysis / Gluconeogenesis
asez00053  Ascorbate and aldarate metabolism
asez00061  Fatty acid biosynthesis
asez00071  Fatty acid degradation
asez00190  Oxidative phosphorylation
asez00220  Arginine biosynthesis
asez00250  Alanine, aspartate and glutamate metabolism
asez00280  Valine, leucine and isoleucine degradation
asez00350  Tyrosine metabolism
asez00470  D-Amino acid metabolism
asez00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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