KEGG   PATHWAY: asoc00020
Entry
asoc00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Aneurinibacillus soli
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
asoc00020  Citrate cycle (TCA cycle)
asoc00020

Module
asoc_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:asoc00020]
asoc_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:asoc00020]
asoc_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:asoc00020]
asoc_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:asoc00020]
asoc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:asoc00020]
Other DBs
GO: 0006099
Organism
Aneurinibacillus soli [GN:asoc]
Gene
CB4_03720  citZ; Citrate synthase 2 [KO:K01659] [EC:2.3.3.5]
CB4_00805  citB_1; Aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
CB4_00840  citB_2; Aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
CB4_03719  icd; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
CB4_03515  dmlA; D-malate dehydrogenase [decarboxylating] [KO:K00030] [EC:1.1.1.41]
CB4_03318  lpd; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CB4_01307  pdhD_1; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CB4_03995  pdhD_2; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CB4_02993  korA; 2-oxoglutarate oxidoreductase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
CB4_02992  korB; 2-oxoglutarate oxidoreductase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CB4_01829  sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
CB4_01828  sucC; Succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
CB4_02095  cat1_2; Succinyl-CoA:coenzyme A transferase [KO:K18118] [EC:2.8.3.18]
CB4_00369  cat1_1; Succinyl-CoA:coenzyme A transferase [KO:K18118] [EC:2.8.3.18]
CB4_01111  frdA; Fumarate reductase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CB4_01112  frdB; Fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CB4_01110  sdhC; Succinate dehydrogenase cytochrome b558 subunit [KO:K00241]
CB4_01515  ttdB; L(+)-tartrate dehydratase subunit beta [KO:K01676] [EC:4.2.1.2]
CB4_02825  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
CB4_03718  mdh_2; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CB4_01558  mqo1; putative malate:quinone oxidoreductase 1 [KO:K00116] [EC:1.1.5.4]
CB4_03419  cfiB_2; 2-oxoglutarate carboxylase small subunit [KO:K01958] [EC:6.4.1.1]
CB4_03625  pckA; Phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
CB4_01304  pdhA_1; Pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
CB4_01305  pdhB_1; Pyruvate dehydrogenase E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
CB4_01306  pdhC_1; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
CB4_03105  porA; Pyruvate synthase subunit PorA [KO:K00169] [EC:1.2.7.1]
CB4_03106  porC; Pyruvate synthase subunit PorC [KO:K00172] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
asoc00010  Glycolysis / Gluconeogenesis
asoc00053  Ascorbate and aldarate metabolism
asoc00061  Fatty acid biosynthesis
asoc00071  Fatty acid degradation
asoc00190  Oxidative phosphorylation
asoc00220  Arginine biosynthesis
asoc00250  Alanine, aspartate and glutamate metabolism
asoc00280  Valine, leucine and isoleucine degradation
asoc00350  Tyrosine metabolism
asoc00470  D-Amino acid metabolism
asoc00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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