KEGG   PATHWAY: atd00020
Entry
atd00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Aethina tumida (small hive beetle)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
atd00020  Citrate cycle (TCA cycle)
atd00020

Module
atd_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:atd00020]
atd_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:atd00020]
atd_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:atd00020]
atd_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:atd00020]
atd_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:atd00020]
Other DBs
GO: 0006099
Organism
Aethina tumida (small hive beetle) [GN:atd]
Gene
109601151  probable citrate synthase 1, mitochondrial [KO:K01647] [EC:2.3.3.1]
109604847  probable citrate synthase 2, mitochondrial [KO:K01647] [EC:2.3.3.1]
109603269  ATP-citrate synthase isoform X1 [KO:K01648] [EC:2.3.3.8]
109596974  probable aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
109600310  cytoplasmic aconitate hydratase-like isoform X1 [KO:K01681] [EC:4.2.1.3]
109601142  isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
109603534  isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
109600609  probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial isoform X2 [KO:K00030] [EC:1.1.1.41]
109609597  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial [KO:K00030] [EC:1.1.1.41]
109608364  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial-like isoform X1 [KO:K00030] [EC:1.1.1.41]
109596405  2-oxoglutarate dehydrogenase-like, mitochondrial [KO:K00164] [EC:1.2.4.2]
109602521  2-oxoglutarate dehydrogenase complex component E1 isoform X1 [KO:K00164] [EC:1.2.4.2]
109594631  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
109602374  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
109598649  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
109599715  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
109600382  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
109598426  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
109608804  succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
109599748  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
109603165  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
109607726  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
109602799  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
109606018  succinate dehydrogenase [ubiquinone] iron-sulfur subunit-like [KO:K00235] [EC:1.3.5.1]
109601813  LOW QUALITY PROTEIN: succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
109603500  succinate dehydrogenase [ubiquinone] iron-sulfur subunit-like [KO:K00235] [EC:1.3.5.1]
109596621  succinate dehydrogenase cytochrome b560 subunit, mitochondrial [KO:K00236]
109596622  succinate dehydrogenase cytochrome b560 subunit, mitochondrial [KO:K00236]
109594614  succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like [KO:K00236]
109605332  succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial-like [KO:K00237]
109609174  succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial [KO:K00237]
109594137  fumarate hydratase, mitochondrial isoform X1 [KO:K01679] [EC:4.2.1.2]
109606052  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
109596759  malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
109600830  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
109599676  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
109602600  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
109599160  uncharacterized protein LOC109599160 [KO:K00026] [EC:1.1.1.37]
109599161  uncharacterized protein LOC109599161 [KO:K00026] [EC:1.1.1.37]
109598601  pyruvate carboxylase, mitochondrial isoform X1 [KO:K01958] [EC:6.4.1.1]
109598602  pyruvate carboxylase, mitochondrial-like [KO:K01958] [EC:6.4.1.1]
109595928  phosphoenolpyruvate carboxykinase [GTP]-like isoform X1 [KO:K01596] [EC:4.1.1.32]
109594613  probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial isoform X2 [KO:K00161] [EC:1.2.4.1]
109599527  probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [KO:K00161] [EC:1.2.4.1]
109598628  pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
109609496  pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
109599828  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
109601460  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
atd00010  Glycolysis / Gluconeogenesis
atd00053  Ascorbate and aldarate metabolism
atd00061  Fatty acid biosynthesis
atd00062  Fatty acid elongation
atd00071  Fatty acid degradation
atd00190  Oxidative phosphorylation
atd00220  Arginine biosynthesis
atd00250  Alanine, aspartate and glutamate metabolism
atd00280  Valine, leucine and isoleucine degradation
atd00350  Tyrosine metabolism
atd00470  D-Amino acid metabolism
atd00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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