KEGG   PATHWAY: atl00020
Entry
atl00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Actinocatenispora thailandica
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
atl00020  Citrate cycle (TCA cycle)
atl00020

Module
atl_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:atl00020]
atl_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:atl00020]
atl_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:atl00020]
atl_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:atl00020]
Other DBs
GO: 0006099
Organism
Actinocatenispora thailandica [GN:atl]
Gene
Athai_03600  citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
Athai_05520  citrate synthase [KO:K01647] [EC:2.3.3.1]
Athai_26180  gltA2; citrate synthase 1 [KO:K01647] [EC:2.3.3.1]
Athai_33740  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
Athai_48940  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
Athai_52060  icd; isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
Athai_06940  kgd; alpha-ketoglutarate decarboxylase [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
Athai_37460  pdhD_2; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
Athai_57390  pdhD_3; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
Athai_54740  oxidoreductase [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Athai_54750  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Athai_52400  sucD; succinate--CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
Athai_52410  sucC1; succinate--CoA ligase [ADP-forming] subunit beta 1 [KO:K01903] [EC:6.2.1.5]
Athai_06110  sdhA_1; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Athai_30320  sdhA_2; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Athai_06100  sdhB; succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
Athai_30310  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
Athai_30330  succinate dehydrogenase [KO:K00241]
Athai_00850  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
Athai_52080  mdh_2; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Athai_26300  mdh_1; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Athai_20190  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
Athai_09110  pdhA_1; pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
Athai_10310  pdhA_2; pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
Athai_09120  acoB; pyruvate dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
Athai_10320  pyruvate dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
Athai_37470  dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Athai_09130  hypothetical protein [KO:K00627] [EC:2.3.1.12]
Athai_10330  acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
atl00010  Glycolysis / Gluconeogenesis
atl00053  Ascorbate and aldarate metabolism
atl00061  Fatty acid biosynthesis
atl00071  Fatty acid degradation
atl00190  Oxidative phosphorylation
atl00220  Arginine biosynthesis
atl00250  Alanine, aspartate and glutamate metabolism
atl00280  Valine, leucine and isoleucine degradation
atl00350  Tyrosine metabolism
atl00470  D-Amino acid metabolism
atl00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system