KEGG   PATHWAY: aub00020
Entry
aub00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Aurantimonas sp. HBX-1
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
aub00020  Citrate cycle (TCA cycle)
aub00020

Module
aub_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:aub00020]
aub_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:aub00020]
aub_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:aub00020]
aub_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:aub00020]
aub_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:aub00020]
Other DBs
GO: 0006099
Organism
Aurantimonas sp. HBX-1 [GN:aub]
Gene
LXB15_09125  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
LXB15_20355  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
LXB15_07770  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
LXB15_19685  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
LXB15_19690  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
LXB15_17955  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LXB15_19705  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LXB15_09015  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LXB15_19680  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
LXB15_19675  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
LXB15_20560  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
LXB15_20545  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
LXB15_20570  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
LXB15_20565  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
LXB15_16380  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
LXB15_19670  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
LXB15_01375  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
LXB15_18540  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
LXB15_09045  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
LXB15_09040  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
LXB15_09030  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
aub00010  Glycolysis / Gluconeogenesis
aub00053  Ascorbate and aldarate metabolism
aub00061  Fatty acid biosynthesis
aub00071  Fatty acid degradation
aub00190  Oxidative phosphorylation
aub00220  Arginine biosynthesis
aub00250  Alanine, aspartate and glutamate metabolism
aub00280  Valine, leucine and isoleucine degradation
aub00350  Tyrosine metabolism
aub00470  D-Amino acid metabolism
aub00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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