KEGG   PATHWAY: aus00020
Entry
aus00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Austwickia sp. Fred_18-Q3-R57-64_BATAC.85v2
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
aus00020  Citrate cycle (TCA cycle)
aus00020

Module
aus_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:aus00020]
aus_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:aus00020]
aus_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:aus00020]
aus_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:aus00020]
Other DBs
GO: 0006099
Organism
Austwickia sp. Fred_18-Q3-R57-64_BATAC.85v2 [GN:aus]
Gene
IPK37_03265  helix-turn-helix domain-containing protein [KO:K01647] [EC:2.3.3.1]
IPK37_05245  citrate synthase [KO:K01647] [EC:2.3.3.1]
IPK37_06230  citrate synthase [KO:K01647] [EC:2.3.3.1]
IPK37_12160  citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
IPK37_18730  aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
IPK37_02330  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
IPK37_01925  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
IPK37_14050  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
IPK37_18385  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
IPK37_13015  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
IPK37_15825  3-methyl-2-oxobutanoate dehydrogenase subunit VorB [KO:K00174] [EC:1.2.7.3 1.2.7.11]
IPK37_13010  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
IPK37_15820  2-oxoglutarate oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
IPK37_15815  2-oxoacid:acceptor oxidoreductase family protein [KO:K00177] [EC:1.2.7.3]
IPK37_15830  4Fe-4S binding protein [KO:K00176] [EC:1.2.7.3]
IPK37_02520  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
IPK37_02525  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
IPK37_18070  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
IPK37_12515  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
IPK37_12520  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
IPK37_12510  succinate dehydrogenase cytochrome b subunit [KO:K00241]
IPK37_13485  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
IPK37_02370  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
IPK37_04370  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
IPK37_16750  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
IPK37_18390  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
IPK37_15625  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
IPK37_16905  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
aus00010  Glycolysis / Gluconeogenesis
aus00053  Ascorbate and aldarate metabolism
aus00061  Fatty acid biosynthesis
aus00071  Fatty acid degradation
aus00190  Oxidative phosphorylation
aus00220  Arginine biosynthesis
aus00250  Alanine, aspartate and glutamate metabolism
aus00280  Valine, leucine and isoleucine degradation
aus00350  Tyrosine metabolism
aus00470  D-Amino acid metabolism
aus00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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