KEGG   PATHWAY: auz00020
Entry
auz00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Aureimonas sp. SA4125
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
auz00020  Citrate cycle (TCA cycle)
auz00020

Module
auz_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:auz00020]
auz_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:auz00020]
auz_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:auz00020]
auz_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:auz00020]
auz_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:auz00020]
Other DBs
GO: 0006099
Organism
Aureimonas sp. SA4125 [GN:auz]
Gene
Sa4125_22350  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
Sa4125_42100  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
Sa4125_26210  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
Sa4125_43470  sucA; 2-oxoglutarate dehydrogenase subunit E1 [KO:K00164] [EC:1.2.4.2]
Sa4125_43460  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
Sa4125_22150  lpdA1; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
Sa4125_43410  lpdA2; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
Sa4125_43480  succinate--CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
Sa4125_43510  sucC; succinate--CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
Sa4125_41760  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Sa4125_41680  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
Sa4125_41780  succinate dehydrogenase membrane anchor subunit [KO:K00241]
Sa4125_41770  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
Sa4125_03450  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
Sa4125_43520  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Sa4125_37900  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
Sa4125_45790  pckA; phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
Sa4125_22190  pdhA; pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
Sa4125_22180  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
Sa4125_22170  pdhC; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
auz00010  Glycolysis / Gluconeogenesis
auz00053  Ascorbate and aldarate metabolism
auz00061  Fatty acid biosynthesis
auz00071  Fatty acid degradation
auz00190  Oxidative phosphorylation
auz00220  Arginine biosynthesis
auz00250  Alanine, aspartate and glutamate metabolism
auz00280  Valine, leucine and isoleucine degradation
auz00350  Tyrosine metabolism
auz00470  D-Amino acid metabolism
auz00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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