KEGG   PATHWAY: babr00020
Entry
babr00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Brucella abortus bv. 6 870
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
babr00020  Citrate cycle (TCA cycle)
babr00020

Module
babr_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:babr00020]
babr_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:babr00020]
babr_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:babr00020]
babr_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:babr00020]
babr_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:babr00020]
Other DBs
GO: 0006099
Organism
Brucella abortus bv. 6 870 [GN:babr]
Gene
DO74_738  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
DO74_1771  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
DO74_691  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
DO74_21  sucA; oxoglutarate dehydrogenase (succinyl-transferring), E1 component [KO:K00164] [EC:1.2.4.2]
DO74_22  sucB; dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
DO74_26  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DO74_758  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DO74_3095  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DO74_20  sucD; succinate-CoA ligase, alpha subunit [KO:K01902] [EC:6.2.1.5]
DO74_19  sucC; succinate-CoA ligase, beta subunit [KO:K01903] [EC:6.2.1.5]
DO74_828  succinate CoA transferase family protein [KO:K18118] [EC:2.8.3.18]
DO74_43  sdhA; succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
DO74_44  succinate dehydrogenase and fumarate reductase iron-sulfur family protein [KO:K00240] [EC:1.3.5.1]
DO74_41  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
DO74_42  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
DO74_926  hydrolyase, tartrate alpha subunit/fumarate, Fe-S type domain protein [KO:K01676] [EC:4.2.1.2]
DO74_2263  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
DO74_18  mdh; malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
DO74_154  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
DO74_1951  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
DO74_755  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
DO74_756  hypothetical protein [KO:K00162] [EC:1.2.4.1]
DO74_757  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
DO74_2409  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
babr00010  Glycolysis / Gluconeogenesis
babr00053  Ascorbate and aldarate metabolism
babr00061  Fatty acid biosynthesis
babr00071  Fatty acid degradation
babr00190  Oxidative phosphorylation
babr00220  Arginine biosynthesis
babr00250  Alanine, aspartate and glutamate metabolism
babr00280  Valine, leucine and isoleucine degradation
babr00350  Tyrosine metabolism
babr00470  D-Amino acid metabolism
babr00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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