KEGG   PATHWAY: baco00020
Entry
baco00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Bacillus sp. OxB-1
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
baco00020  Citrate cycle (TCA cycle)
baco00020

Module
baco_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:baco00020]
baco_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:baco00020]
baco_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:baco00020]
baco_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:baco00020]
baco_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:baco00020]
Other DBs
GO: 0006099
Organism
Bacillus sp. OxB-1 [GN:baco]
Gene
OXB_3268  citrate synthase [KO:K01647] [EC:2.3.3.1]
OXB_2619  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
OXB_3267  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
OXB_2541  2-oxoglutarate dehydrogenase e1 component [KO:K00164] [EC:1.2.4.2]
OXB_2542  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
OXB_2732  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
OXB_1906  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
OXB_2030  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
OXB_2029  succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
OXB_0828  succinyl-coa:coenzyme a transferase [KO:K18118] [EC:2.8.3.18]
OXB_3198  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
OXB_3197  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
OXB_3199  succinate dehydrogenase, cytochrome b subunit [KO:K00241]
OXB_0254  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
OXB_0557  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
OXB_1308  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
OXB_0396  malate/lactate dehydrogenases [KO:K00024] [EC:1.1.1.37]
OXB_3266  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
OXB_0897  malate:quinone-oxidoreductase [KO:K00116] [EC:1.1.5.4]
OXB_1918  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
OXB_0002  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
OXB_1903  pyruvate dehydrogenase e1 component subunit [KO:K00161] [EC:1.2.4.1]
OXB_1904  pyruvate dehydrogenase e1 component subunit [KO:K00162] [EC:1.2.4.1]
OXB_1905  branched-chain alpha-keto acid dehydrogenase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
baco00010  Glycolysis / Gluconeogenesis
baco00061  Fatty acid biosynthesis
baco00071  Fatty acid degradation
baco00190  Oxidative phosphorylation
baco00220  Arginine biosynthesis
baco00250  Alanine, aspartate and glutamate metabolism
baco00280  Valine, leucine and isoleucine degradation
baco00350  Tyrosine metabolism
baco00470  D-Amino acid metabolism
baco00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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