KEGG   PATHWAY: baml00020
Entry
baml00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Bacillus velezensis UCMB5036
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
baml00020  Citrate cycle (TCA cycle)
baml00020

Module
baml_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:baml00020]
baml_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:baml00020]
baml_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:baml00020]
baml_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:baml00020]
baml_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:baml00020]
Other DBs
GO: 0006099
Organism
Bacillus velezensis UCMB5036 [GN:baml]
Gene
BAM5036_0872  citA; citrate synthase I [KO:K01647] [EC:2.3.3.1]
BAM5036_2558  citZ; citrate synthase II [KO:K01647] [EC:2.3.3.1]
BAM5036_2165  mmgD; 2-methylcitrate synthase/citrate synthase III [KO:K01647] [EC:2.3.3.1]
BAM5036_1719  citB; aconitate hydratase (aconitase) [KO:K01681] [EC:4.2.1.3]
BAM5036_2557  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
BAM5036_1844  odhA; 2-oxoglutarate dehydrogenase (E1 subunit) [KO:K00164] [EC:1.2.4.2]
BAM5036_1843  odhB; 2-oxoglutarate dehydrogenase complex (dihydrolipoamide transsuccinylase, E2 subunit) [KO:K00658] [EC:2.3.1.61]
BAM5036_0744  acoL; acetoin dehydrogenase E3 component (dihydrolipoamide dehydrogenase) [KO:K00382] [EC:1.8.1.4]
BAM5036_1383  pdhD; dihydrolipoamide dehydrogenase E3 subunit of both pyruvate dehydrogenase and 2-oxoglutarate dehydrogenase complexes [KO:K00382] [EC:1.8.1.4]
BAM5036_2157  lpdV; branched-chain alpha-keto acid dehydrogenase E3 subunit (dihydrolipoamide dehydrogenase) [KO:K00382] [EC:1.8.1.4]
BAM5036_1530  sucD; succinyl-CoA synthetase (alpha subunit) [KO:K01902] [EC:6.2.1.5]
BAM5036_1529  sucC; succinyl-CoA synthetase (beta subunit) [KO:K01903] [EC:6.2.1.5]
BAM5036_2491  sdhA; succinate dehydrogenase (flavoprotein subunit) [KO:K00239] [EC:1.3.5.1]
BAM5036_2490  sdhB; succinate dehydrogenase (iron-sulfur protein) [KO:K00240] [EC:1.3.5.1]
BAM5036_2492  sdhC; succinate dehydrogenase (cytochrome b558 subunit) [KO:K00241]
BAM5036_2928  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
BAM5036_2556  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BAM5036_1408  pycA; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
BAM5036_2692  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
BAM5036_1380  pdhA; pyruvate dehydrogenase (E1 alpha subunit) [KO:K00161] [EC:1.2.4.1]
BAM5036_1381  pdhB; pyruvate dehydrogenase (E1 beta subunit) [KO:K00162] [EC:1.2.4.1]
BAM5036_0743  acoC; acetoin dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [KO:K00627] [EC:2.3.1.12]
BAM5036_1382  pdhC; pyruvate dehydrogenase (dihydrolipoamide acetyltransferase E2 subunit) [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
baml00010  Glycolysis / Gluconeogenesis
baml00053  Ascorbate and aldarate metabolism
baml00061  Fatty acid biosynthesis
baml00071  Fatty acid degradation
baml00190  Oxidative phosphorylation
baml00220  Arginine biosynthesis
baml00250  Alanine, aspartate and glutamate metabolism
baml00280  Valine, leucine and isoleucine degradation
baml00350  Tyrosine metabolism
baml00470  D-Amino acid metabolism
baml00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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